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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0324300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ribosomal protein S8 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.79 (0.0403) R2 : 0.00128
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0649 (0.0848) R2dN8 : 0.00166 R2N8 : 0.00128
σ : 0.759
deviance : 264.13
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
249.33 0.742 2.85 -0.671 0.166 0.834 0.0671 -7.48 0.0233 14.5 30.03 12 -- --
259.34 0.756 2.79 -0.0782 0.184 0.187 -0.186 -- 0.0644 13.5 30.03 12 -- --
249.34 0.735 2.85 -0.666 0.165 0.833 -- -7.43 0.0238 14.3 30.03 12 -- --
258.6 0.754 2.79 -0.0892 0.169 0.239 -- -- 0.0643 13.6 30 8 -- --
250.77 0.738 2.85 -0.689 -- 0.921 -- -7.57 0.0255 -- 30.09 12 -- --
260.54 0.757 2.79 -0.0606 0.236 -- -0.136 -- 0.0629 13.9 -- -- -- --
260.61 0.756 2.79 -0.0647 0.237 -- -- -- 0.0622 14 -- -- -- --
260.16 0.755 2.79 -0.102 -- 0.308 -- -- 0.0618 -- 30 8 -- --
258.81 0.753 2.79 -- 0.173 0.232 -- -- 0.0741 13.6 30 8 -- --
263.98 0.759 2.8 -0.0745 -- -- -- -- 0.0566 -- -- -- -- --
260.72 0.755 2.79 -- 0.238 -- -- -- 0.0694 14 -- -- -- --
260.43 0.754 2.79 -- -- 0.302 -- -- 0.073 -- 30 8 -- --
264.13 0.759 2.79 -- -- -- -- -- 0.0649 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 242.00 wind 1.0 90 < th dose dependent rect. 13 1
7 243.41 temperature 30.0 10 > th dose independent rect. 14 1
11 244.71 wind 1.0 90 < th dose independent rect. 13 2
13 245.20 temperature 30.0 10 > th dose independent rect. 12 7
28 245.26 temperature 30.0 10 > th dose independent sin 15 NA
53 246.27 temperature 30.0 10 < th dose independent sin 15 NA
61 246.73 wind 5.0 90 > th dose dependent rect. 12 1
64 246.95 wind 5.0 90 > th dose independent rect. 12 2
78 248.51 wind 9.0 10 > th dose dependent rect. 17 1
84 248.69 temperature 30.0 10 > th dose independent rect. 18 21
86 248.90 temperature 30.0 10 > th dose independent rect. 10 8
109 249.23 humidity 80.0 10 > th dose dependent rect. 10 1
144 249.40 humidity 80.0 10 > th dose independent rect. 10 1
183 249.49 temperature 30.0 10 > th dose independent no NA NA
307 249.70 temperature 30.0 10 < th dose independent no NA NA
309 249.80 wind 5.0 10 > th dose independent rect. 13 1
314 250.13 temperature 30.0 10 < th dose independent rect. 3 23
349 251.01 humidity 60.0 30 > th dose independent rect. 12 2
352 251.17 temperature 30.0 10 < th dose independent rect. 17 23
353 251.20 wind 1.0 270 < th dose dependent rect. 21 1
356 251.28 temperature 30.0 10 < th dose independent rect. 10 23
358 251.52 wind 1.0 30 < th dose dependent rect. 10 4
367 251.83 temperature 30.0 10 < th dose independent rect. 13 23
371 251.96 wind 5.0 10 > th dose dependent rect. 12 2
373 251.99 temperature 30.0 10 < th dose independent rect. 6 10
376 252.12 wind 1.0 720 > th dose independent rect. 14 8
378 252.17 radiation 30.0 10 < th dose independent rect. 14 1
387 252.57 temperature 25.0 10 < th dose independent rect. 17 18
395 252.66 temperature 30.0 10 < th dose independent rect. 6 23
406 252.86 temperature 30.0 10 < th dose independent rect. 11 15
415 252.91 temperature 30.0 10 > th dose independent rect. 18 1
430 252.92 temperature 30.0 90 < th dose dependent rect. 12 1
439 253.05 radiation 20.0 10 > th dose independent rect. 12 2
440 253.08 temperature 30.0 10 < th dose independent rect. 11 5
446 253.29 radiation 1.0 4320 > th dose independent rect. 9 1
449 253.40 atmosphere 1005.0 90 < th dose dependent rect. 8 1
450 253.43 temperature 30.0 10 < th dose independent rect. 11 13
457 253.53 wind 1.0 270 < th dose independent rect. 21 1
458 253.54 wind 1.0 270 < th dose dependent rect. 15 7
469 253.71 temperature 25.0 10 > th dose dependent rect. 12 2
471 253.74 temperature 25.0 10 < th dose independent rect. 9 1
474 253.78 radiation 30.0 30 < th dose independent rect. 9 1
497 253.96 radiation 1.0 4320 < th dose independent rect. 9 1
499 253.96 radiation 1.0 4320 < th dose dependent rect. 9 1
510 254.00 temperature 25.0 10 < th dose independent rect. 20 15
515 254.03 radiation 40.0 30 < th dose dependent rect. 9 2
550 254.16 temperature 30.0 90 < th dose independent rect. 12 1
560 254.19 humidity 50.0 10 > th dose dependent rect. 16 19
583 254.26 radiation 1.0 90 < th dose independent rect. 8 3
584 254.26 radiation 1.0 90 < th dose dependent rect. 8 3
591 254.33 temperature 25.0 10 < th dose independent rect. 2 9
592 254.35 wind 1.0 30 < th dose dependent rect. 10 13
593 254.36 wind 3.0 90 < th dose independent rect. 9 1
595 254.37 atmosphere 1005.0 10 > th dose independent rect. 18 1
604 254.45 radiation 1.0 270 < th dose independent rect. 14 1
606 254.45 radiation 1.0 270 < th dose dependent rect. 14 1
607 254.46 wind 3.0 720 < th dose independent rect. 8 2
608 254.46 humidity 80.0 30 < th dose independent rect. 12 2
619 254.50 humidity 70.0 10 < th dose independent rect. 18 1
621 254.50 temperature 25.0 10 > th dose dependent rect. 18 1
625 254.52 radiation 1.0 1440 > th dose independent rect. 12 1
635 254.54 temperature 30.0 10 < th dose independent rect. 11 18
636 254.54 atmosphere 1000.0 30 > th dose dependent rect. 12 2
641 254.56 atmosphere 1000.0 30 > th dose independent rect. 12 2
651 254.59 temperature 25.0 30 < th dose independent rect. 5 6
655 254.60 temperature 30.0 10 < th dose independent rect. 11 10
661 254.62 temperature 10.0 1440 > th dose independent rect. 13 1
665 254.62 atmosphere 995.0 1440 > th dose independent rect. 13 1
668 254.62 temperature 10.0 1440 > th dose independent rect. 14 23
686 254.71 temperature 30.0 90 < th dose dependent rect. 9 1
687 254.71 humidity 80.0 10 < th dose dependent rect. 18 1
700 254.79 wind 7.0 30 < th dose dependent rect. 12 1
701 254.80 wind 7.0 30 < th dose independent rect. 12 1
702 254.80 temperature 25.0 10 < th dose independent rect. 13 1
710 254.81 temperature 20.0 30 > th dose independent rect. 12 1
715 254.82 temperature 25.0 10 < th dose independent rect. 24 11
718 254.82 humidity 70.0 30 < th dose dependent rect. 18 16
722 254.84 wind 5.0 90 < th dose dependent rect. 9 1
725 254.85 radiation 40.0 30 > th dose independent rect. 12 1
730 254.85 wind 5.0 720 < th dose dependent rect. 8 2
747 254.92 humidity 60.0 10 > th dose independent rect. 12 23
750 254.93 wind 9.0 30 > th dose independent rect. 17 1
754 254.93 radiation 20.0 30 > th dose dependent rect. 12 1
764 254.97 atmosphere 1010.0 30 < th dose independent rect. 12 1
765 254.97 radiation 40.0 90 < th dose independent rect. 12 2
768 254.97 radiation 40.0 30 < th dose dependent rect. 16 19
775 255.00 radiation 30.0 30 < th dose independent rect. 16 19
777 255.01 wind 3.0 720 < th dose independent rect. 6 8
780 255.02 humidity 60.0 14400 < th dose independent rect. 6 1
782 255.02 humidity 60.0 14400 < th dose independent rect. 20 1
784 255.02 radiation 20.0 14400 > th dose independent rect. 17 1
836 255.02 humidity 60.0 14400 < th dose dependent rect. 6 1
838 255.02 humidity 60.0 14400 < th dose dependent rect. 20 1
840 255.02 radiation 20.0 14400 > th dose dependent rect. 17 1
905 255.09 atmosphere 1015.0 30 < th dose dependent rect. 12 1
911 255.11 wind 7.0 720 < th dose independent rect. 2 8
913 255.11 humidity 60.0 90 < th dose independent rect. 18 16
918 255.12 wind 1.0 4320 < th dose dependent rect. 21 1
924 255.14 wind 1.0 270 < th dose dependent rect. 10 12
931 255.16 radiation 1.0 1440 < th dose dependent rect. 13 3
933 255.17 temperature 10.0 30 > th dose independent rect. 12 1
938 255.17 precipitation 0.1 30 < th dose independent rect. 12 1
940 255.17 temperature 10.0 30 > th dose independent rect. 13 23
942 255.17 precipitation 0.1 30 < th dose dependent rect. 12 1
944 255.18 wind 7.0 10 < th dose dependent rect. 18 1
949 255.20 wind 1.0 30 > th dose independent rect. 12 1
950 255.20 radiation 1.0 1440 < th dose independent rect. 13 2
955 255.20 radiation 1.0 1440 < th dose dependent rect. 10 6
968 255.24 wind 3.0 720 > th dose independent rect. 6 8
971 255.25 humidity 90.0 30 < th dose dependent rect. 12 1
975 255.27 radiation 20.0 4320 > th dose independent rect. 7 2
976 255.27 atmosphere 1000.0 90 < th dose independent rect. 7 3
983 255.29 atmosphere 1000.0 10 < th dose independent rect. 8 2
985 255.29 radiation 20.0 4320 > th dose independent rect. 6 4