Os05g0323400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0323400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 139.46 | 0.555 | 5.53 | -3.07 | 1.41 | -1.77 | 0.106 | -0.832 | -0.75 | 6.05 | 25.2 | 10 | -- | -- |
| 140.85 | 0.553 | 5.54 | -3.15 | 1.43 | -1.69 | -0.0774 | -- | -0.77 | 6.04 | 25.33 | 10 | -- | -- |
| 139.49 | 0.55 | 5.53 | -3.08 | 1.41 | -1.76 | -- | -0.813 | -0.751 | 6.05 | 25.2 | 10 | -- | -- |
| 140.68 | 0.552 | 5.54 | -3.19 | 1.41 | -1.7 | -- | -- | -0.778 | 6.09 | 25.2 | 10 | -- | -- |
| 233.92 | 0.716 | 5.53 | -3.01 | -- | -1.71 | -- | -0.884 | -0.628 | -- | 23.7 | 7 | -- | -- |
| 183.57 | 0.635 | 5.46 | -2.79 | 1.32 | -- | -0.14 | -- | -0.433 | 7.07 | -- | -- | -- | -- |
| 183.62 | 0.635 | 5.46 | -2.8 | 1.32 | -- | -- | -- | -0.433 | 7.06 | -- | -- | -- | -- |
| 235.22 | 0.717 | 5.55 | -3.11 | -- | -1.62 | -- | -- | -0.649 | -- | 23.7 | 7 | -- | -- |
| 385.63 | 0.92 | 5.41 | -- | 1.3 | -0.495 | -- | -- | -0.209 | 6.9 | 25.3 | 5 | -- | -- |
| 275.35 | 0.775 | 5.49 | -2.77 | -- | -- | -- | -- | -0.409 | -- | -- | -- | -- | -- |
| 389.67 | 0.923 | 5.39 | -- | 1.29 | -- | -- | -- | -0.121 | 7.2 | -- | -- | -- | -- |
| 472.48 | 1.02 | 5.44 | -- | -- | -0.582 | -- | -- | -0.169 | -- | 23.37 | 6 | -- | -- |
| 477.78 | 1.02 | 5.42 | -- | -- | -- | -- | -- | -0.102 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 137.66 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 16 | 139.17 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 24 | 139.54 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 26 | 139.61 | temperature | 25.0 | 10 | < th | dose dependent | no | NA | NA |
| 27 | 139.65 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 28 | 139.66 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 30 | 139.70 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 31 | 139.75 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 35 | 139.94 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 36 | 139.96 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 37 | 139.97 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 60 | 140.53 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 68 | 140.89 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 7 | 17 |
| 92 | 141.59 | temperature | 25.0 | 720 | < th | dose dependent | sin | 19 | NA |
| 166 | 142.85 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 16 | 6 |
| 170 | 142.92 | temperature | 15.0 | 270 | > th | dose dependent | sin | 13 | NA |
| 173 | 142.96 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 15 | 8 |
| 198 | 143.25 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 206 | 143.29 | temperature | 15.0 | 10 | > th | dose dependent | sin | 11 | NA |
| 237 | 143.56 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 3 |
| 276 | 143.94 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 286 | 144.02 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 287 | 144.02 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 316 | 144.26 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 15 | 17 |
| 321 | 144.32 | temperature | 30.0 | 10 | < th | dose dependent | sin | 11 | NA |
| 323 | 144.34 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 336 | 144.44 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 399 | 144.85 | temperature | 30.0 | 270 | < th | dose dependent | sin | 13 | NA |
| 584 | 146.12 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 601 | 146.24 | temperature | 20.0 | 270 | > th | dose independent | rect. | 13 | 22 |
| 641 | 146.49 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 738 | 147.02 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 17 | 6 |
| 898 | 147.56 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 13 | 16 |
| 928 | 147.68 | temperature | 20.0 | 270 | > th | dose independent | rect. | 23 | 23 |
| 947 | 147.74 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 971 | 147.81 | temperature | 20.0 | 270 | > th | dose independent | rect. | 10 | 23 |
| 976 | 147.82 | temperature | 20.0 | 270 | > th | dose independent | rect. | 14 | 19 |