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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0321900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : DNA-binding WRKY domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.25 (0.144) R2 : 0.309
β1 : 3.09 (1.33) R2dD : 0.759 R2D : -0.424
β2 : 0.895 (0.0962) R2dC : 0.133 R2C : 0.0395
β3 : -7.17 (5.26) R2dE : 1.75 R2E : -2.69
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 84.6 (50.2) R2dD*E : 2.98 R2D*E : -2.19
γ1 : 0.204 (0.0823) R2dN8 : 0.0125 R2N8 : -0.0782
σ : 0.719
deviance : 238.23
__
_____
C
peak time of C : 3.04
E
wheather : temperature
threshold : 30.3
memory length : 1512
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.02
open length of G : 0.853

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
232.45 0.716 3.25 3.11 0.889 -7.13 1.31 84.2 0.21 2.96 30.3 1514 8 0.872
301.92 0.809 3.49 0.99 0.803 -6.32 1.5 -- 0.152 2.81 31.23 166 7.46 1.52
238.23 0.719 3.25 3.09 0.895 -7.17 -- 84.6 0.204 3.04 30.3 1512 8.02 0.853
276.96 0.775 3.48 0.769 0.89 -1.33 -- -- 0.171 4.1 31.28 86 7.24 1.73
283.92 0.785 3.24 3.32 -- -8.07 -- 92.9 0.213 -- 30.59 1403 8.34 0.628
266.2 0.765 3.49 0.95 0.907 -- 1.35 -- 0.16 2.99 -- -- -- --
272.25 0.773 3.5 0.92 0.914 -- -- -- 0.152 3.08 -- -- -- --
319.14 0.832 3.5 0.965 -- -0.761 -- -- 0.172 -- 30.49 72 7.34 1.96
294.18 0.799 3.52 -- 0.931 -0.527 -- -- 0.0466 3.11 30.7 81 7.86 1.33
320.02 0.836 3.5 0.959 -- -- -- -- 0.175 -- -- -- -- --
294.57 0.803 3.52 -- 0.932 -- -- -- 0.0491 3.08 -- -- -- --
338.44 0.86 3.53 -- -- -0.627 -- -- 0.0331 -- 9.468 2 9.86 1.11
344.29 0.866 3.52 -- -- -- -- -- 0.069 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 239.87 temperature 30.0 1440 > th dose dependent rect. 8 1
29 245.09 temperature 30.0 4320 > th dose independent rect. 8 1
57 247.22 wind 1.0 4320 < th dose independent rect. 20 3
58 247.40 atmosphere 1005.0 270 < th dose independent rect. 1 3
59 247.44 atmosphere 1005.0 90 < th dose independent rect. 1 6
65 248.32 temperature 30.0 4320 < th dose independent rect. 7 2
67 248.70 atmosphere 1005.0 10 < th dose independent rect. 1 6
71 248.77 temperature 30.0 4320 < th dose independent rect. 24 9
75 248.95 temperature 30.0 4320 < th dose independent rect. 19 14
78 249.05 temperature 30.0 4320 < th dose independent rect. 3 6
80 249.09 temperature 30.0 4320 < th dose independent rect. 21 12
81 249.10 wind 1.0 1440 < th dose dependent rect. 6 2
96 249.54 humidity 90.0 720 < th dose dependent rect. 15 2
107 250.02 precipitation 0.1 90 > th dose independent rect. 13 16
110 250.06 wind 1.0 1440 < th dose independent rect. 6 2
124 250.30 precipitation 0.1 90 > th dose independent rect. 2 20
129 250.32 precipitation 0.1 90 > th dose independent rect. 2 18
146 250.39 precipitation 0.1 90 > th dose independent rect. 19 23
148 250.47 precipitation 0.1 90 > th dose independent rect. 5 23
168 250.70 wind 1.0 1440 > th dose independent rect. 6 4
178 250.74 precipitation 0.1 90 > th dose independent sin 0 NA
180 250.76 wind 1.0 1440 < th dose independent rect. 6 4
183 250.79 precipitation 0.1 90 > th dose independent rect. 21 23
184 250.79 wind 1.0 4320 < th dose dependent rect. 20 3
185 250.80 precipitation 0.1 90 > th dose independent no NA NA
186 250.80 precipitation 0.1 90 < th dose independent no NA NA
196 250.80 precipitation 0.1 90 < th dose dependent no NA NA
206 250.84 precipitation 0.1 90 > th dose independent rect. 15 23
209 250.88 wind 1.0 4320 > th dose independent rect. 21 2
225 251.03 wind 1.0 4320 < th dose dependent rect. 18 5
235 251.15 radiation 1.0 270 < th dose dependent rect. 21 23
239 251.23 wind 1.0 4320 < th dose dependent rect. 16 7
246 251.32 precipitation 0.1 90 < th dose independent sin 0 NA
247 251.32 precipitation 0.1 90 < th dose dependent sin 0 NA
256 251.44 humidity 80.0 720 < th dose independent rect. 12 5
260 251.45 precipitation 0.1 90 > th dose dependent rect. 19 23
262 251.49 humidity 80.0 720 < th dose independent rect. 14 3
265 251.50 humidity 80.0 720 < th dose independent rect. 15 1
270 251.54 precipitation 0.1 90 > th dose dependent rect. 2 19
272 251.55 precipitation 0.1 90 > th dose dependent rect. 3 17
278 251.56 precipitation 0.1 90 > th dose dependent rect. 13 17
301 251.62 radiation 1.0 1440 > th dose independent rect. 9 3
302 251.67 precipitation 0.1 90 > th dose dependent sin 0 NA
303 251.68 wind 1.0 720 < th dose independent rect. 20 3
330 251.78 radiation 1.0 270 < th dose independent rect. 21 23
331 251.78 precipitation 0.1 90 > th dose dependent no NA NA
337 251.78 humidity 80.0 10 > th dose dependent rect. 3 23
342 251.78 precipitation 0.1 90 > th dose dependent rect. 21 23
345 251.79 precipitation 0.1 90 > th dose dependent rect. 5 23
353 251.82 precipitation 0.1 90 > th dose dependent rect. 15 23
355 251.83 humidity 80.0 1440 > th dose independent rect. 12 2
358 251.85 precipitation 0.1 90 > th dose independent sin 14 NA
371 251.90 precipitation 0.1 90 > th dose independent rect. 10 9
375 251.91 precipitation 0.1 90 > th dose independent rect. 13 6
389 252.04 humidity 70.0 270 > th dose independent rect. 16 13
391 252.04 humidity 80.0 1440 > th dose dependent rect. 12 2
419 252.21 humidity 80.0 1440 < th dose independent rect. 12 2
445 252.38 precipitation 0.1 90 > th dose dependent rect. 16 3
454 252.49 humidity 90.0 10 < th dose independent rect. 6 16
458 252.53 precipitation 0.1 90 > th dose independent rect. 16 3
468 252.57 precipitation 0.1 90 > th dose independent rect. 13 11
486 252.68 precipitation 0.1 90 > th dose dependent rect. 10 9
490 252.72 radiation 1.0 270 > th dose independent rect. 16 23
497 252.74 wind 1.0 1440 < th dose dependent rect. 6 4
507 252.81 precipitation 0.1 90 > th dose independent rect. 5 19
516 252.86 precipitation 0.1 90 > th dose dependent rect. 5 14
524 252.92 humidity 50.0 270 > th dose dependent rect. 15 14
528 252.93 precipitation 0.1 90 > th dose dependent sin 13 NA
545 253.01 wind 1.0 1440 < th dose dependent rect. 6 6
583 253.19 wind 1.0 720 < th dose dependent rect. 19 4
627 253.36 radiation 1.0 1440 < th dose independent rect. 11 1
629 253.36 radiation 1.0 1440 < th dose dependent rect. 11 1
651 253.42 precipitation 0.1 90 > th dose dependent rect. 13 11
702 253.55 humidity 80.0 720 > th dose independent rect. 11 6
704 253.55 humidity 90.0 90 < th dose independent rect. 23 22
736 253.62 humidity 50.0 90 > th dose dependent rect. 13 17
740 253.63 radiation 1.0 720 < th dose dependent rect. 9 8
748 253.68 radiation 1.0 270 < th dose independent rect. 10 19
763 253.74 humidity 80.0 10 > th dose dependent rect. 3 17
765 253.75 radiation 1.0 270 < th dose independent rect. 7 22
766 253.75 humidity 50.0 720 > th dose dependent rect. 10 19
786 253.82 humidity 70.0 90 > th dose independent rect. 13 17
803 253.88 humidity 70.0 10 > th dose dependent rect. 22 22
805 253.90 radiation 1.0 270 < th dose independent rect. 10 2
808 253.90 radiation 1.0 270 < th dose dependent rect. 10 2
866 254.15 humidity 50.0 720 > th dose dependent rect. 11 9
869 254.15 humidity 70.0 10 > th dose dependent rect. 10 21
873 254.16 humidity 80.0 10 > th dose dependent rect. 3 20
875 254.17 radiation 1.0 1440 < th dose independent rect. 9 3
876 254.17 radiation 1.0 1440 < th dose dependent rect. 9 3
877 254.17 humidity 80.0 720 < th dose dependent rect. 14 18
895 254.22 radiation 1.0 270 < th dose dependent rect. 10 19
925 254.28 humidity 80.0 10 > th dose dependent rect. 24 23
929 254.30 humidity 90.0 90 < th dose independent rect. 16 18
941 254.32 humidity 80.0 10 > th dose dependent rect. 8 23
948 254.33 radiation 1.0 270 < th dose dependent rect. 7 22
988 254.47 precipitation 0.1 30 < th dose independent rect. 23 23
989 254.47 precipitation 0.1 30 < th dose dependent rect. 23 23