Os05g0320300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0320300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 150.09 | 0.576 | 9.28 | -2.09 | 3.08 | 0.845 | 1.79 | -1.38 | -0.178 | 7.55 | 84.71 | 1324 | -- | -- |
| 152.48 | 0.575 | 9.26 | -1.95 | 3.1 | 0.755 | 1.81 | -- | -0.157 | 7.59 | 86 | 1267 | -- | -- |
| 158.73 | 0.587 | 9.28 | -2.05 | 3.13 | 0.894 | -- | -1.55 | -0.194 | 7.64 | 86 | 1199 | -- | -- |
| 161.62 | 0.592 | 9.27 | -1.92 | 3.09 | 0.73 | -- | -- | -0.161 | 7.56 | 85 | 1309 | -- | -- |
| 665.6 | 1.2 | 9.35 | -1.93 | -- | 0.938 | -- | -1.2 | -0.114 | -- | 90 | 1380 | -- | -- |
| 165.05 | 0.602 | 9.27 | -1.86 | 3.1 | -- | 1.79 | -- | -0.168 | 7.44 | -- | -- | -- | -- |
| 173.84 | 0.617 | 9.27 | -1.82 | 3.1 | -- | -- | -- | -0.172 | 7.44 | -- | -- | -- | -- |
| 668.61 | 1.2 | 9.34 | -1.85 | -- | 0.872 | -- | -- | -0.131 | -- | 89.77 | 1383 | -- | -- |
| 254.3 | 0.743 | 9.22 | -- | 3.09 | 0.549 | -- | -- | 0.0213 | 7.55 | 98.53 | 1339 | -- | -- |
| 686.9 | 1.22 | 9.34 | -1.77 | -- | -- | -- | -- | -0.122 | -- | -- | -- | -- | -- |
| 261.01 | 0.756 | 9.22 | -- | 3.08 | -- | -- | -- | 0.0309 | 7.48 | -- | -- | -- | -- |
| 758.2 | 1.28 | 9.3 | -- | -- | 0.69 | -- | -- | 0.0512 | -- | 99.1 | 1385 | -- | -- |
| 769.5 | 1.29 | 9.3 | -- | -- | -- | -- | -- | 0.0745 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 147.19 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 2 | 147.26 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 3 | 147.29 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 9 | 8 |
| 5 | 147.31 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 7 | 10 |
| 6 | 147.32 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 8 | 147.35 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 9 | 147.35 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 2 | 13 |
| 15 | 147.57 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 18 | 147.59 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 29 | 147.76 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 11 | 6 |
| 34 | 147.86 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 2 | 14 |
| 36 | 147.90 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 6 | 10 |
| 40 | 147.99 | humidity | 80.0 | 1440 | < th | dose independent | sin | 4 | NA |
| 69 | 148.25 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 10 | 8 |
| 77 | 148.58 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 11 |
| 86 | 148.63 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 91 | 148.65 | humidity | 80.0 | 1440 | > th | dose independent | sin | 3 | NA |
| 111 | 148.78 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 129 | 148.89 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 131 | 148.89 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 141 | 148.96 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 9 | 9 |
| 158 | 148.99 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 159 | 148.99 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 20 | 18 |
| 161 | 149.00 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 167 | 149.03 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 168 | 149.04 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 176 | 149.07 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 5 |
| 198 | 149.14 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 20 | 12 |
| 239 | 149.31 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 242 | 149.39 | radiation | 10.0 | 1440 | > th | dose independent | sin | 21 | NA |
| 251 | 149.49 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 7 | 11 |
| 252 | 149.50 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 19 | NA |
| 266 | 149.61 | humidity | 80.0 | 1440 | < th | dose dependent | sin | 6 | NA |
| 271 | 149.65 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 23 | 15 |
| 288 | 149.71 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 6 | 8 |
| 299 | 149.73 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 301 | 149.73 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 303 | 149.73 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 355 | 149.73 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 357 | 149.73 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 359 | 149.73 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 442 | 149.88 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 451 | 149.91 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 455 | 149.93 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 476 | 150.06 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 480 | 150.07 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 539 | 150.19 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 564 | 150.24 | radiation | 10.0 | 1440 | > th | dose independent | no | NA | NA |
| 704 | 150.48 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 708 | 150.49 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 747 | 150.59 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 797 | 150.75 | humidity | 90.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 822 | 150.79 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 841 | 150.84 | radiation | 1.0 | 10 | < th | dose independent | rect. | 5 | 13 |
| 861 | 150.88 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 863 | 150.88 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 877 | 150.91 | humidity | 70.0 | 1440 | > th | dose independent | sin | 8 | NA |
| 878 | 150.91 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 945 | 151.00 | radiation | 1.0 | 10 | < th | dose independent | rect. | 7 | 11 |
| 948 | 151.00 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 975 | 151.06 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 986 | 151.06 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |