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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0319800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Plasma membrane H+ ATPase (EC 3.6.3.6).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.92 (0.0292) R2 : 1.61e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00527 (0.0616) R2dN8 : 2.07e-05 R2N8 : 1.61e-05
σ : 0.551
deviance : 139.23
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
133.32 0.543 2.94 -0.0725 0.12 0.475 -0.019 -1.67 0.00896 22.6 2.039 6 -- --
135.04 0.545 2.92 -0.0354 0.0973 0.353 -0.22 -- 0.0169 0.146 2.039 6 -- --
131.62 0.538 2.95 -0.0873 0.112 0.542 -- -1.87 0.00413 22.1 2 5 -- --
135.22 0.545 2.92 -0.0269 0.1 0.358 -- -- 0.0186 23.2 2.039 6 -- --
132.38 0.539 2.94 -0.0859 -- 0.548 -- -1.82 0.00501 -- 2 5 -- --
137.23 0.549 2.92 0.0245 0.174 -- -0.184 -- 0.00434 1.89 -- -- -- --
137.36 0.549 2.92 0.0303 0.174 -- -- -- 0.00549 1.76 -- -- -- --
135.82 0.545 2.92 -0.03 -- 0.39 -- -- 0.0204 -- 2.039 6 -- --
135.24 0.545 2.92 -- 0.1 0.352 -- -- 0.0212 23.3 2.039 6 -- --
139.2 0.551 2.92 0.0374 -- -- -- -- 0.00942 -- -- -- -- --
137.38 0.548 2.92 -- 0.174 -- -- -- 0.00212 1.77 -- -- -- --
135.84 0.545 2.92 -- -- 0.384 -- -- 0.0234 -- 2.039 6 -- --
139.23 0.551 2.92 -- -- -- -- -- 0.00527 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 122.95 atmosphere 1000.0 90 < th dose independent rect. 2 3
2 123.00 atmosphere 1000.0 90 < th dose dependent rect. 2 3
3 123.49 atmosphere 1000.0 10 < th dose independent rect. 3 1
10 123.49 atmosphere 1000.0 10 < th dose dependent rect. 3 1
30 123.74 wind 1.0 90 < th dose independent rect. 2 1
32 125.51 radiation 1.0 90 > th dose independent rect. 4 1
42 125.51 radiation 1.0 90 > th dose dependent rect. 4 1
58 126.58 wind 1.0 90 < th dose dependent rect. 2 2
65 126.91 atmosphere 1000.0 270 < th dose independent rect. 24 4
81 127.28 radiation 1.0 10 < th dose dependent rect. 6 1
98 128.37 wind 1.0 10 < th dose dependent rect. 6 1
125 129.90 wind 1.0 10 < th dose independent rect. 2 2
150 130.40 wind 1.0 10 < th dose dependent rect. 4 5
166 130.68 radiation 1.0 4320 < th dose dependent rect. 3 1
172 130.77 wind 9.0 1440 < th dose independent rect. 3 1
173 130.77 temperature 10.0 1440 > th dose independent rect. 3 1
176 130.77 temperature 30.0 1440 < th dose independent rect. 3 1
180 130.77 humidity 50.0 1440 > th dose independent rect. 3 1
189 130.77 atmosphere 995.0 1440 > th dose independent rect. 3 1
190 130.77 radiation 1.0 1440 < th dose independent rect. 3 1
210 130.77 temperature 10.0 1440 > th dose independent rect. 4 23
239 130.94 temperature 20.0 90 > th dose dependent rect. 2 1
246 131.06 wind 3.0 10 < th dose dependent rect. 2 2
251 131.15 temperature 20.0 90 > th dose independent rect. 2 1
258 131.26 atmosphere 1015.0 90 < th dose dependent rect. 2 1
265 131.43 temperature 20.0 10 > th dose independent rect. 2 2
266 131.46 humidity 80.0 90 > th dose independent rect. 2 1
267 131.48 wind 1.0 30 > th dose dependent rect. 2 1
270 131.56 temperature 20.0 10 > th dose dependent rect. 2 2
276 131.69 humidity 70.0 90 > th dose dependent rect. 2 1
280 131.74 wind 7.0 90 > th dose dependent rect. 23 2
282 131.75 temperature 15.0 90 > th dose independent rect. 3 23
290 131.85 wind 7.0 90 > th dose independent rect. 23 2
291 131.86 precipitation 0.1 90 < th dose independent rect. 2 1
292 131.86 precipitation 0.1 90 < th dose dependent rect. 2 1
294 131.88 temperature 10.0 90 > th dose independent rect. 2 1
296 131.88 temperature 30.0 90 < th dose independent rect. 2 1
297 131.88 humidity 50.0 90 > th dose independent rect. 2 1
300 131.88 atmosphere 995.0 90 > th dose independent rect. 2 1
301 131.88 atmosphere 1010.0 90 < th dose independent rect. 2 1
303 131.88 radiation 1.0 90 < th dose independent rect. 2 1
309 131.88 radiation 1.0 90 < th dose dependent rect. 2 1
337 131.94 wind 7.0 90 > th dose independent rect. 24 4
338 131.94 wind 7.0 90 > th dose dependent rect. 24 4
339 131.94 wind 7.0 90 > th dose dependent rect. 24 8
341 131.95 atmosphere 1015.0 1440 < th dose independent rect. 3 1
347 131.97 wind 7.0 90 > th dose independent rect. 24 8
356 132.00 wind 5.0 90 > th dose dependent rect. 1 1
365 132.06 humidity 90.0 10 > th dose independent rect. 2 1
369 132.07 precipitation 0.1 270 > th dose independent rect. 22 1
371 132.07 precipitation 0.1 270 > th dose dependent rect. 22 1
403 132.20 temperature 25.0 10 < th dose independent rect. 2 1
405 132.22 atmosphere 1000.0 10 > th dose independent rect. 2 1
410 132.24 temperature 30.0 30 < th dose dependent rect. 2 1
414 132.26 wind 1.0 30 > th dose independent rect. 2 1
422 132.28 humidity 80.0 10 > th dose dependent rect. 2 1
428 132.31 wind 5.0 10 < th dose independent rect. 2 1
432 132.31 wind 9.0 90 < th dose independent rect. 3 23
493 132.39 atmosphere 995.0 30 > th dose dependent rect. 2 1
514 132.52 radiation 1.0 10 < th dose independent rect. 6 1
529 132.58 wind 1.0 10 < th dose independent rect. 5 4
533 132.60 wind 1.0 10 < th dose independent rect. 5 2
566 132.75 precipitation 0.1 30 < th dose independent rect. 3 23
567 132.75 precipitation 0.1 30 < th dose dependent rect. 3 23
585 132.86 wind 1.0 720 < th dose independent rect. 20 1
588 132.88 wind 1.0 720 < th dose dependent rect. 20 1
596 132.92 humidity 90.0 10 < th dose independent rect. 5 1
604 132.97 wind 3.0 10 < th dose dependent rect. 5 23
613 133.03 humidity 80.0 10 > th dose independent rect. 17 11
643 133.22 wind 1.0 90 < th dose independent rect. 5 1
649 133.24 atmosphere 1000.0 30 > th dose independent rect. 3 23
654 133.25 wind 3.0 10 < th dose dependent rect. 10 18
670 133.33 atmosphere 1010.0 10 < th dose dependent rect. 24 4
706 133.41 wind 1.0 10 < th dose dependent rect. 4 8
733 133.50 humidity 70.0 10 > th dose dependent rect. 17 11
740 133.53 wind 7.0 10 < th dose dependent rect. 10 18
750 133.57 temperature 20.0 30 > th dose independent rect. 5 1
775 133.58 temperature 25.0 10 < th dose independent rect. 24 4
781 133.60 wind 9.0 10 < th dose dependent rect. 17 11
782 133.61 humidity 50.0 10 > th dose dependent rect. 17 11
787 133.63 atmosphere 1000.0 720 < th dose dependent rect. 12 1
837 133.75 radiation 20.0 10 < th dose independent rect. 4 22
840 133.75 wind 3.0 10 < th dose dependent rect. 19 9
856 133.80 radiation 1.0 10 > th dose dependent rect. 18 1
877 133.83 wind 1.0 10 < th dose independent rect. 13 1
879 133.83 humidity 60.0 10 > th dose independent rect. 4 22
880 133.83 wind 1.0 10 < th dose dependent rect. 13 1
884 133.84 atmosphere 1000.0 10 < th dose dependent rect. 13 1
900 133.86 atmosphere 1000.0 90 < th dose independent rect. 13 1
909 133.86 humidity 70.0 10 > th dose dependent rect. 19 9
958 133.92 wind 1.0 10 < th dose dependent rect. 4 18
970 133.95 atmosphere 1000.0 90 > th dose independent rect. 3 6
973 133.95 wind 1.0 10 < th dose dependent rect. 4 14
977 133.96 wind 1.0 10 < th dose dependent rect. 4 12
983 133.98 atmosphere 1005.0 10 > th dose independent rect. 4 2
989 134.00 radiation 40.0 10 < th dose independent rect. 4 6