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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0319700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Protein kinase-like protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.57 (0.0531) R2 : 0.332
β1 : -1.29 (0.223) R2dD : 0.0712 R2D : 0.157
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.22 (0.268) R2dE : 0.158 R2E : 0.265
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.163 (0.125) R2dN8 : 0.00174 R2N8 : 0.0117
σ : 0.961
deviance : 426.05
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 30.5
memory length : 4565
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15.9
open length of G : 16

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
416.54 0.959 3.57 -1.49 0.0582 1.57 1.89 -1.83 -0.149 5.75 30.14 4519 16 16
421.73 0.956 3.57 -1.46 0.0529 1.84 1.83 -- -0.116 5.77 30.07 4562 15.9 16
423.62 0.959 3.57 -1.44 0.0636 1.62 -- -1.81 -0.144 6.04 30.07 4465 15.9 16
428.27 0.964 3.59 -1.38 0.0668 1.98 -- -- -0.121 6.18 30.47 4465 15.9 16
423.91 0.959 3.57 -1.44 -- 1.62 -- -1.81 -0.14 -- 30.08 4465 15.9 16
480.28 1.03 3.71 -2.28 0.0979 -- 1.92 -- -0.634 5.5 -- -- -- --
489.35 1.04 3.71 -2.27 0.115 -- -- -- -0.642 6.62 -- -- -- --
426.05 0.961 3.57 -1.29 -- 2.22 -- -- -0.163 -- 30.5 4565 15.9 16
446.28 0.984 3.55 -- 0.072 2.77 -- -- 0.163 5.85 30.82 7072 15.9 16
490.04 1.03 3.72 -2.27 -- -- -- -- -0.64 -- -- -- -- --
625.61 1.17 3.66 -- 0.0935 -- -- -- -0.389 8.07 -- -- -- --
446.5 0.984 3.54 -- -- 2.83 -- -- 0.187 -- 30.78 7081 15.9 16
626.09 1.17 3.66 -- -- -- -- -- -0.388 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 430.92 radiation 30 4320 > th dose independent rect. 16 16
2 431.73 wind 3 4320 > th dose independent rect. 8 1
3 432.88 radiation 30 4320 > th dose independent rect. 7 1
18 433.07 radiation 20 14400 < th dose independent rect. 5 1
19 433.17 wind 3 4320 < th dose independent rect. 8 1
20 434.13 wind 1 14400 > th dose independent rect. 13 14
26 435.52 wind 1 14400 < th dose independent rect. 13 14
27 435.77 wind 3 4320 < th dose independent rect. 6 3
33 436.22 wind 3 14400 < th dose dependent rect. 14 13
34 436.24 temperature 15 4320 < th dose independent rect. 4 1
42 436.71 wind 3 14400 < th dose dependent rect. 22 5
43 437.05 temperature 20 4320 < th dose independent rect. 16 1
47 437.19 radiation 30 4320 > th dose dependent rect. 7 1
63 437.34 temperature 20 4320 > th dose independent rect. 16 1
68 437.75 wind 1 43200 < th dose independent rect. 8 3
78 438.35 wind 3 14400 < th dose dependent rect. 1 2
121 438.88 wind 1 43200 < th dose dependent rect. 9 2
143 439.45 wind 3 14400 < th dose dependent rect. 14 1
155 440.02 wind 1 14400 > th dose independent rect. 23 4
156 440.04 wind 1 43200 > th dose independent rect. 8 3
158 440.10 wind 3 14400 < th dose dependent rect. 23 1
167 440.37 wind 3 14400 < th dose dependent sin 15 NA
180 440.95 wind 9 14400 < th dose independent rect. 23 2
196 441.49 temperature 15 4320 > th dose independent rect. 4 1
203 441.62 wind 5 4320 < th dose dependent rect. 6 3
205 441.69 wind 7 14400 > th dose independent rect. 21 1
208 441.73 wind 7 14400 > th dose dependent rect. 21 1
227 441.85 wind 7 14400 < th dose independent rect. 21 1
228 441.86 wind 1 14400 > th dose independent sin 16 NA
232 441.90 wind 5 4320 < th dose dependent rect. 8 1
247 442.34 wind 9 14400 < th dose independent rect. 23 4
256 442.52 wind 7 14400 < th dose independent rect. 20 17
276 442.89 wind 1 14400 < th dose independent sin 16 NA
277 442.89 wind 7 14400 > th dose independent rect. 20 17
279 442.92 wind 1 14400 > th dose independent rect. 24 2
285 443.01 wind 9 14400 > th dose dependent rect. 23 1
287 443.05 radiation 30 4320 < th dose independent rect. 24 8
288 443.05 wind 5 14400 > th dose dependent rect. 21 17
290 443.06 radiation 30 4320 < th dose independent rect. 19 13
291 443.07 radiation 30 4320 < th dose independent rect. 21 11
297 443.10 wind 3 14400 < th dose dependent rect. 6 21
301 443.14 wind 9 14400 < th dose dependent rect. 23 1
305 443.17 wind 5 14400 < th dose independent rect. 24 13
318 443.27 wind 9 14400 > th dose independent rect. 23 1
324 443.32 wind 5 14400 > th dose dependent sin 6 NA
326 443.34 wind 5 14400 > th dose independent rect. 24 13
337 443.45 radiation 30 4320 < th dose independent rect. 17 15
345 443.51 wind 1 14400 > th dose dependent rect. 23 1
352 443.54 wind 5 14400 < th dose independent sin 5 NA
356 443.57 radiation 30 4320 < th dose independent rect. 2 6
360 443.59 wind 3 14400 > th dose independent rect. 13 20
361 443.60 wind 5 14400 > th dose independent sin 5 NA
374 443.67 wind 3 14400 < th dose independent rect. 13 20
378 443.68 radiation 30 4320 < th dose independent rect. 4 4
382 443.72 wind 5 14400 > th dose dependent rect. 23 15
400 443.80 wind 5 14400 > th dose dependent rect. 6 5
401 443.81 wind 3 14400 < th dose dependent rect. 22 22
444 444.04 wind 3 14400 < th dose independent rect. 22 21
451 444.08 wind 1 14400 > th dose independent rect. 6 21
484 444.26 wind 3 14400 > th dose independent rect. 22 21
493 444.28 humidity 90 14400 > th dose dependent rect. 12 2
539 444.54 humidity 90 14400 > th dose dependent rect. 12 4
554 444.59 wind 1 14400 < th dose independent rect. 6 21
579 444.69 wind 3 14400 < th dose dependent no NA NA
611 444.83 wind 1 4320 > th dose dependent rect. 6 3
650 444.99 humidity 60 43200 > th dose independent rect. 2 1
697 445.15 wind 5 14400 > th dose independent rect. 23 1
759 445.34 humidity 90 43200 > th dose independent rect. 4 1
762 445.35 wind 1 14400 < th dose independent rect. 23 4
791 445.44 wind 5 14400 > th dose dependent rect. 9 1
849 445.62 wind 1 14400 < th dose independent rect. 24 2
894 445.72 wind 1 14400 > th dose dependent rect. 22 4
905 445.77 wind 3 14400 < th dose independent no NA NA
918 445.81 wind 1 14400 > th dose independent rect. 13 9
920 445.81 wind 3 14400 < th dose independent rect. 17 23
921 445.81 humidity 80 43200 < th dose dependent rect. 1 2
957 445.91 wind 3 14400 < th dose independent rect. 14 1
970 445.93 humidity 90 43200 < th dose independent rect. 3 3
980 445.96 wind 3 14400 > th dose independent no NA NA
987 445.97 wind 1 43200 < th dose independent rect. 6 17
991 445.97 wind 3 14400 < th dose independent rect. 1 23
999 445.99 wind 1 43200 < th dose independent rect. 7 12