Os05g0318700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Resistance protein candidate (Fragment).
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Os05g0318700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Resistance protein candidate (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 92.98 | 0.453 | 11 | 1.81 | 1.75 | -1.24 | -0.331 | 1.95 | 0.618 | 18.1 | 23.2 | 12 | -- | -- |
| 95.3 | 0.458 | 11 | 1.52 | 1.72 | -1.07 | -0.134 | -- | 0.526 | 18.1 | 23 | 16 | -- | -- |
| 93.23 | 0.45 | 11 | 1.8 | 1.75 | -1.24 | -- | 1.83 | 0.614 | 18.1 | 23.14 | 12 | -- | -- |
| 95.34 | 0.458 | 11 | 1.52 | 1.72 | -1.08 | -- | -- | 0.527 | 18.1 | 23 | 16 | -- | -- |
| 228.44 | 0.704 | 11 | 1.54 | -- | -0.357 | -- | 1.07 | 0.445 | -- | 20.8 | 2 | -- | -- |
| 113.64 | 0.5 | 11 | 1.31 | 1.5 | -- | -0.282 | -- | 0.368 | 19 | -- | -- | -- | -- |
| 113.85 | 0.5 | 11 | 1.32 | 1.5 | -- | -- | -- | 0.368 | 19 | -- | -- | -- | -- |
| 229.29 | 0.705 | 11 | 1.34 | -- | -0.301 | -- | -- | 0.388 | -- | 20.4 | 2 | -- | -- |
| 152.45 | 0.578 | 11.1 | -- | 1.61 | -0.659 | -- | -- | 0.288 | 18.5 | 24.06 | 28 | -- | -- |
| 231.41 | 0.711 | 11 | 1.29 | -- | -- | -- | -- | 0.34 | -- | -- | -- | -- | -- |
| 159.56 | 0.591 | 11.1 | -- | 1.48 | -- | -- | -- | 0.221 | 19.1 | -- | -- | -- | -- |
| 254.78 | 0.743 | 11.1 | -- | -- | 1.11 | -- | -- | 0.0659 | -- | 12.57 | 462 | -- | -- |
| 275.08 | 0.774 | 11 | -- | -- | -- | -- | -- | 0.197 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 87.67 | temperature | 20 | 10 | > th | dose dependent | sin | 2 | NA |
| 6 | 88.45 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 13 |
| 13 | 88.82 | temperature | 30 | 10 | < th | dose dependent | sin | 1 | NA |
| 61 | 91.06 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 64 | 91.25 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 18 |
| 79 | 91.75 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 16 |
| 83 | 91.79 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 11 |
| 86 | 91.94 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 88 | 91.95 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 11 |
| 133 | 92.88 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 134 | 92.92 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 11 |
| 200 | 93.75 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 15 |
| 231 | 94.03 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 18 |
| 234 | 94.06 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 17 |
| 237 | 94.08 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 12 |
| 245 | 94.21 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 264 | 94.38 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 268 | 94.43 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 280 | 94.56 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 5 |
| 310 | 94.74 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 314 | 94.78 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 332 | 94.84 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 333 | 94.85 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 355 | 95.02 | temperature | 25 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 356 | 95.03 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 15 |
| 358 | 95.03 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 17 |
| 387 | 95.15 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 6 |
| 398 | 95.23 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 407 | 95.27 | temperature | 25 | 90 | < th | dose independent | rect. | 5 | 13 |
| 414 | 95.29 | temperature | 25 | 270 | > th | dose independent | sin | 4 | NA |
| 423 | 95.30 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 7 |
| 427 | 95.32 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 7 |
| 507 | 95.60 | temperature | 25 | 90 | < th | dose independent | sin | 1 | NA |
| 528 | 95.66 | temperature | 25 | 90 | > th | dose independent | sin | 1 | NA |
| 570 | 95.80 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 586 | 95.84 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 587 | 95.85 | temperature | 25 | 270 | < th | dose independent | sin | 4 | NA |
| 594 | 95.87 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 611 | 95.91 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 4 |
| 667 | 96.02 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 689 | 96.08 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 691 | 96.08 | temperature | 30 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 779 | 96.24 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 20 |
| 899 | 96.46 | temperature | 25 | 1440 | > th | dose independent | rect. | 9 | 13 |
| 929 | 96.55 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 944 | 96.56 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 21 |
| 969 | 96.62 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 980 | 96.64 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 12 |
| 983 | 96.64 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 987 | 96.65 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 14 |