Os05g0318600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein kinase (Pto kinase) (Serine/threonine protein kinase Pto).
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Os05g0318600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein kinase (Pto kinase) (Serine/threonine protein kinase Pto).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73.28 | 0.402 | 7.95 | 4.45 | 0.00458 | -1.36 | -1.19 | -5.54 | 0.755 | 4.91 | 0.17 | 4328 | -- | -- |
| 88.43 | 0.438 | 8.12 | 3.73 | 0.0114 | -0.389 | -1.16 | -- | 0.523 | 4.96 | 13.64 | 7139 | -- | -- |
| 75.73 | 0.405 | 7.95 | 4.43 | 0.0571 | -1.4 | -- | -5.71 | 0.774 | 4.11 | 0.1694 | 4385 | -- | -- |
| 88.3 | 0.438 | 8.11 | 3.6 | 0.0843 | -0.437 | -- | -- | 0.507 | 5.97 | 6.655 | 15371 | -- | -- |
| 75.92 | 0.406 | 7.95 | 4.45 | -- | -1.39 | -- | -5.76 | 0.768 | -- | 0.1702 | 4381 | -- | -- |
| 90.41 | 0.446 | 8.09 | 3.67 | 0.0348 | -- | -1.09 | -- | 0.64 | 4.97 | -- | -- | -- | -- |
| 93.44 | 0.453 | 8.08 | 3.67 | 0.0296 | -- | -- | -- | 0.645 | 3.37 | -- | -- | -- | -- |
| 88.54 | 0.438 | 8.11 | 3.68 | -- | -0.381 | -- | -- | 0.52 | -- | 13.71 | 15438 | -- | -- |
| 158.77 | 0.587 | 8.3 | -- | 0.1 | -2.82 | -- | -- | -0.399 | 14.9 | 0.005694 | 47520 | -- | -- |
| 93.49 | 0.452 | 8.08 | 3.67 | -- | -- | -- | -- | 0.646 | -- | -- | -- | -- | -- |
| 448.43 | 0.991 | 8.18 | -- | 0.102 | -- | -- | -- | 0.236 | 3.29 | -- | -- | -- | -- |
| 155.79 | 0.581 | 8.33 | -- | -- | -2.65 | -- | -- | -0.482 | -- | 1.886e-06 | 47520 | -- | -- |
| 449.02 | 0.989 | 8.18 | -- | -- | -- | -- | -- | 0.238 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.66 | temperature | 15 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 2 | 68.71 | temperature | 20 | 14400 | < th | dose dependent | rect. | 5 | 15 |
| 3 | 68.76 | temperature | 15 | 14400 | > th | dose independent | rect. | 2 | 2 |
| 10 | 68.92 | temperature | 15 | 14400 | < th | dose independent | rect. | 1 | 3 |
| 12 | 68.94 | humidity | 70 | 43200 | < th | dose independent | rect. | 23 | 9 |
| 22 | 69.09 | temperature | 15 | 14400 | < th | dose independent | rect. | 24 | 5 |
| 30 | 69.17 | temperature | 15 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 31 | 69.17 | temperature | 20 | 14400 | < th | dose dependent | sin | 23 | NA |
| 36 | 69.20 | temperature | 15 | 14400 | > th | dose independent | sin | 11 | NA |
| 39 | 69.22 | temperature | 15 | 14400 | > th | dose independent | rect. | 20 | 9 |
| 46 | 69.25 | temperature | 15 | 14400 | > th | dose independent | rect. | 21 | 12 |
| 92 | 69.34 | temperature | 15 | 14400 | > th | dose independent | rect. | 24 | 11 |
| 101 | 69.35 | temperature | 15 | 14400 | > th | dose independent | rect. | 24 | 16 |
| 132 | 69.40 | radiation | 1 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 145 | 69.43 | temperature | 20 | 14400 | < th | dose dependent | rect. | 6 | 4 |
| 162 | 69.46 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 191 | 69.53 | temperature | 15 | 14400 | < th | dose independent | rect. | 20 | 10 |
| 278 | 69.68 | temperature | 15 | 14400 | < th | dose independent | sin | 9 | NA |
| 328 | 69.78 | temperature | 15 | 14400 | > th | dose independent | no | NA | NA |
| 367 | 69.90 | temperature | 15 | 14400 | > th | dose independent | rect. | 4 | 23 |
| 371 | 69.91 | temperature | 15 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 381 | 69.95 | humidity | 70 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 451 | 70.18 | temperature | 20 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 481 | 70.28 | temperature | 15 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 491 | 70.31 | humidity | 70 | 43200 | < th | dose dependent | rect. | 1 | 8 |
| 526 | 70.39 | temperature | 15 | 14400 | < th | dose independent | rect. | 23 | 22 |
| 527 | 70.39 | temperature | 20 | 14400 | < th | dose dependent | rect. | 11 | 9 |
| 541 | 70.43 | temperature | 15 | 14400 | > th | dose independent | rect. | 5 | 6 |
| 563 | 70.49 | temperature | 15 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 567 | 70.50 | temperature | 20 | 14400 | < th | dose dependent | rect. | 13 | 7 |
| 576 | 70.52 | humidity | 70 | 43200 | > th | dose independent | rect. | 23 | 9 |
| 660 | 70.74 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 669 | 70.76 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 680 | 70.78 | temperature | 15 | 14400 | < th | dose independent | rect. | 9 | 21 |
| 697 | 70.81 | temperature | 20 | 14400 | < th | dose dependent | rect. | 11 | 4 |
| 766 | 70.96 | humidity | 70 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 771 | 70.97 | temperature | 20 | 14400 | < th | dose dependent | no | NA | NA |
| 772 | 70.97 | temperature | 20 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 803 | 71.04 | temperature | 20 | 14400 | < th | dose dependent | rect. | 14 | 23 |
| 811 | 71.06 | temperature | 15 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 819 | 71.07 | temperature | 20 | 14400 | < th | dose independent | rect. | 13 | 5 |
| 844 | 71.12 | temperature | 15 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 853 | 71.13 | temperature | 15 | 14400 | < th | dose independent | no | NA | NA |
| 863 | 71.16 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 867 | 71.17 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 4 |
| 892 | 71.22 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 893 | 71.22 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 894 | 71.22 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 895 | 71.22 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 918 | 71.27 | temperature | 20 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 926 | 71.28 | humidity | 60 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 952 | 71.33 | temperature | 20 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 959 | 71.36 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 15 |
| 984 | 71.41 | temperature | 20 | 14400 | > th | dose independent | rect. | 13 | 5 |