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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0318100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.53 (0.0537) R2 : 0.333
β1 : 2.16 (0.196) R2dD : 0.201 R2D : 0.121
β2 : 0.689 (0.157) R2dC : 0.178 R2C : 0.0859
β3 : 1.52 (0.248) R2dE : -0.00812 R2E : -0.112
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.884 (0.114) R2dN8 : 0.118 R2N8 : 0.039
σ : 0.914
deviance : 380.14
__
_____
C
peak time of C : 22.8
E
wheather : humidity
threshold : 47.85
memory length : 776
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
376.5 0.912 4.54 2.32 1.81 1.6 0.782 -0.888 0.897 23.4 48.06 752 -- --
377.19 0.905 4.55 2.27 1.82 1.52 1.02 -- 0.885 23.6 49 783 -- --
378.08 0.913 4.53 2.15 0.698 1.48 -- 0.964 0.882 22.8 47.85 776 -- --
380.14 0.914 4.53 2.16 0.689 1.52 -- -- 0.884 22.8 47.85 776 -- --
398.55 0.935 4.5 2.14 -- 1.6 -- 0.607 0.932 -- 60.98 1644 -- --
408.44 0.947 4.53 2.19 1.39 -- 1.03 -- 0.857 0.827 -- -- -- --
412.89 0.952 4.53 2.16 1.39 -- -- -- 0.852 0.83 -- -- -- --
398.17 0.933 4.49 2.15 -- 1.49 -- -- 0.984 -- 67.6 1647 -- --
499.43 1.04 4.54 -- 1.18 1.15 -- -- 0.839 22.8 81.36 253 -- --
533.16 1.08 4.51 2.21 -- -- -- -- 0.878 -- -- -- -- --
535.39 1.08 4.59 -- 1.42 -- -- -- 0.612 0.898 -- -- -- --
519.36 1.06 4.54 -- -- 1.57 -- -- 0.735 -- 65 7 -- --
661.61 1.2 4.57 -- -- -- -- -- 0.633 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 370.92 humidity 90 720 < th dose dependent rect. 13 11
2 370.95 humidity 50 720 > th dose dependent rect. 15 6
13 372.09 humidity 70 30 > th dose dependent rect. 5 23
14 372.13 humidity 50 10 > th dose dependent rect. 9 23
34 372.75 humidity 80 720 < th dose dependent rect. 14 18
35 372.81 radiation 1 1440 > th dose independent rect. 9 1
41 372.91 humidity 50 720 > th dose dependent sin 18 NA
57 373.18 humidity 90 720 < th dose dependent sin 17 NA
60 373.21 humidity 50 720 > th dose dependent rect. 11 12
63 373.31 humidity 50 720 > th dose dependent rect. 9 18
73 373.60 humidity 50 720 > th dose dependent rect. 11 16
76 373.63 humidity 80 1440 > th dose independent rect. 11 3
77 373.68 radiation 1 1440 > th dose independent rect. 9 4
83 373.87 humidity 80 720 > th dose independent rect. 11 10
105 374.22 humidity 50 720 > th dose dependent rect. 9 14
108 374.25 humidity 50 720 > th dose dependent rect. 9 21
117 374.35 humidity 80 1440 < th dose independent rect. 11 3
119 374.35 humidity 50 720 > th dose dependent rect. 1 22
145 374.73 humidity 50 720 > th dose dependent rect. 11 19
160 374.90 humidity 80 720 > th dose independent rect. 8 14
184 375.07 radiation 10 1440 > th dose independent rect. 11 1
194 375.14 humidity 70 720 < th dose dependent rect. 15 2
201 375.26 humidity 60 10 > th dose dependent rect. 12 20
223 375.50 humidity 70 720 > th dose dependent rect. 19 2
226 375.51 humidity 70 10 > th dose dependent rect. 1 23
237 375.63 humidity 90 1440 < th dose dependent rect. 15 1
264 375.91 humidity 90 720 < th dose dependent rect. 7 17
268 375.95 humidity 50 720 > th dose dependent rect. 1 20
270 376.00 humidity 50 1440 > th dose dependent rect. 15 1
299 376.25 wind 7 43200 > th dose independent rect. 17 2
310 376.32 humidity 80 720 > th dose independent rect. 5 16
311 376.32 humidity 50 720 > th dose dependent rect. 11 23
326 376.43 humidity 70 1440 > th dose independent rect. 17 1
327 376.43 humidity 50 720 > th dose dependent rect. 5 22
340 376.51 wind 7 43200 < th dose independent rect. 17 3
352 376.56 humidity 50 720 > th dose dependent rect. 15 12
359 376.60 humidity 90 10 < th dose dependent rect. 7 18
360 376.60 humidity 50 10 > th dose dependent rect. 11 23
362 376.62 humidity 50 720 > th dose dependent rect. 22 23
367 376.65 humidity 80 720 > th dose independent rect. 15 6
376 376.75 humidity 80 720 < th dose independent rect. 12 9
380 376.78 humidity 70 720 > th dose independent rect. 17 4
391 376.85 radiation 1 1440 < th dose independent rect. 9 3
392 376.85 radiation 1 1440 < th dose dependent rect. 9 3
407 376.94 humidity 50 720 > th dose dependent rect. 15 23
415 376.99 humidity 50 720 > th dose dependent no NA NA
435 377.08 humidity 70 10 > th dose dependent rect. 13 23
440 377.12 humidity 80 720 > th dose independent sin 20 NA
457 377.22 humidity 60 720 > th dose independent rect. 15 8
478 377.28 humidity 70 10 > th dose dependent no NA NA
481 377.30 humidity 80 720 > th dose independent rect. 19 2
485 377.32 humidity 80 720 > th dose independent rect. 1 20
538 377.57 humidity 50 720 > th dose dependent rect. 5 18
551 377.64 humidity 70 10 > th dose dependent rect. 15 23
557 377.67 humidity 70 10 > th dose dependent rect. 17 23
563 377.71 humidity 80 1440 > th dose dependent rect. 11 3
566 377.73 radiation 1 1440 < th dose independent rect. 11 1
567 377.73 radiation 1 1440 < th dose dependent rect. 11 1
571 377.74 humidity 50 10 > th dose dependent no NA NA
578 377.77 humidity 70 1440 < th dose independent rect. 17 1
582 377.77 humidity 70 10 > th dose dependent rect. 21 23
596 377.79 humidity 50 1440 > th dose dependent rect. 11 6
616 377.87 humidity 60 720 > th dose independent rect. 15 6
630 377.93 humidity 50 720 > th dose dependent rect. 18 23
631 377.94 humidity 90 720 < th dose dependent no NA NA
638 377.96 humidity 60 720 < th dose independent rect. 15 2
641 377.97 humidity 60 720 < th dose independent rect. 14 21
672 378.12 humidity 80 1440 > th dose independent rect. 13 1
763 378.39 humidity 80 720 < th dose independent rect. 7 14
765 378.39 radiation 1 720 < th dose dependent rect. 7 20
773 378.42 humidity 70 720 > th dose independent rect. 17 10
784 378.44 humidity 70 10 > th dose dependent rect. 19 23
890 378.74 humidity 90 10 < th dose dependent rect. 23 23
906 378.78 wind 7 43200 > th dose dependent rect. 17 3
909 378.78 humidity 90 720 < th dose dependent rect. 20 23
929 378.84 humidity 80 1440 < th dose independent rect. 13 1
930 378.84 humidity 60 720 > th dose independent rect. 15 16
950 378.90 humidity 90 10 < th dose dependent rect. 4 21
952 378.90 humidity 90 720 < th dose dependent rect. 17 23
972 378.92 radiation 1 720 < th dose dependent rect. 9 18