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Os05g0317700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Resistance protein candidate (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.74 (0.0236) R2 : 0.68
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.08 (0.0562) R2dC : 0.256 R2C : 0.253
β3 : -1.55 (0.0757) R2dE : 0.359 R2E : 0.409
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.203 (0.0536) R2dN8 : 0.0101 R2N8 : 0.0658
σ : 0.431
deviance : 85.62
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_____
C
peak time of C : 9.75
E
wheather : radiation
threshold : 3.322
memory length : 37519
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
89.19 0.444 7.59 1.31 1.07 -1.76 -0.107 -3.36 0.56 9.8 1.78 12998 -- --
95 0.454 7.7 0.843 1.04 -1.24 0.147 -- 0.406 9.49 4.846 11629 -- --
88.44 0.438 7.6 1.26 1.03 -1.69 -- -2.96 0.51 9.79 2.35 13003 -- --
93.4 0.45 7.68 0.714 1.06 -1.31 -- -- 0.356 9.56 4.397 13039 -- --
142.76 0.56 7.64 1.06 -- -0.752 -- 0.259 0.741 -- 2.777 5972 -- --
135.22 0.545 7.61 1.08 1.07 -- -0.0897 -- 0.762 9.68 -- -- -- --
135.25 0.545 7.61 1.08 1.07 -- -- -- 0.762 9.67 -- -- -- --
142.91 0.559 7.64 1.07 -- -0.754 -- -- 0.739 -- 3.23 20316 -- --
85.62 0.431 7.74 -- 1.08 -1.55 -- -- 0.203 9.75 3.322 37519 -- --
203.82 0.667 7.64 1.07 -- -- -- -- 0.764 -- -- -- -- --
165.86 0.602 7.63 -- 1.07 -- -- -- 0.642 9.6 -- -- -- --
152.55 0.575 7.76 -- -- -1.54 -- -- 0.201 -- 3.315 39105 -- --
233.93 0.714 7.66 -- -- -- -- -- 0.645 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 83.52 precipitation 0.1 43200 > th dose dependent rect. 2 3
3 83.72 precipitation 0.1 43200 > th dose dependent rect. 1 5
5 83.83 precipitation 0.1 43200 > th dose independent rect. 3 2
8 84.01 precipitation 0.1 43200 < th dose independent rect. 3 2
9 84.01 precipitation 0.1 43200 < th dose dependent rect. 3 2
15 84.29 precipitation 0.1 43200 > th dose dependent rect. 3 6
19 84.34 precipitation 0.1 43200 > th dose dependent rect. 23 8
42 84.75 humidity 80.0 43200 > th dose independent rect. 14 4
59 84.99 humidity 80.0 43200 > th dose independent rect. 16 1
61 85.00 humidity 80.0 43200 < th dose independent rect. 16 1
69 85.09 radiation 1.0 43200 > th dose independent rect. 18 12
75 85.15 precipitation 0.1 43200 < th dose independent rect. 23 8
77 85.15 precipitation 0.1 43200 < th dose dependent rect. 23 8
79 85.16 precipitation 0.1 43200 > th dose independent rect. 23 8
84 85.19 humidity 80.0 43200 > th dose independent rect. 8 11
85 85.20 humidity 70.0 43200 > th dose dependent rect. 13 5
91 85.24 humidity 70.0 43200 > th dose dependent rect. 10 8
92 85.25 humidity 80.0 43200 < th dose independent rect. 8 11
102 85.30 humidity 80.0 43200 < th dose independent rect. 14 4
185 85.73 precipitation 0.1 43200 > th dose dependent rect. 13 1
196 85.80 precipitation 0.1 43200 > th dose dependent rect. 2 12
203 85.86 radiation 1.0 43200 < th dose independent rect. 18 12
228 86.00 radiation 1.0 43200 > th dose independent rect. 5 1
231 86.01 precipitation 0.1 43200 < th dose independent rect. 13 1
234 86.01 precipitation 0.1 43200 < th dose dependent rect. 13 1
237 86.03 radiation 1.0 43200 < th dose independent rect. 5 1
239 86.04 humidity 70.0 43200 > th dose dependent rect. 13 1
253 86.13 radiation 1.0 43200 < th dose independent rect. 3 3
256 86.13 precipitation 0.1 43200 > th dose dependent rect. 19 2
261 86.15 humidity 80.0 43200 < th dose independent rect. 10 1
290 86.22 precipitation 0.1 43200 > th dose dependent rect. 19 13
295 86.26 humidity 90.0 43200 > th dose dependent rect. 7 1
296 86.26 humidity 90.0 43200 > th dose dependent rect. 6 4
302 86.28 precipitation 0.1 43200 > th dose independent rect. 13 1
306 86.29 humidity 80.0 43200 > th dose independent sin 22 NA
339 86.41 humidity 80.0 43200 < th dose independent rect. 9 6
355 86.48 precipitation 0.1 43200 > th dose dependent rect. 19 9
378 86.57 radiation 1.0 43200 > th dose independent rect. 14 16
379 86.57 radiation 1.0 43200 < th dose independent rect. 14 16
383 86.58 humidity 80.0 43200 < th dose independent sin 22 NA
406 86.63 humidity 90.0 43200 > th dose dependent rect. 6 7
417 86.67 radiation 1.0 43200 < th dose independent rect. 11 19
440 86.74 humidity 80.0 43200 > th dose dependent sin 22 NA
450 86.78 radiation 1.0 43200 > th dose independent sin 13 NA
466 86.82 radiation 1.0 43200 < th dose independent sin 13 NA
467 86.82 humidity 80.0 43200 > th dose independent rect. 9 3
475 86.83 precipitation 0.1 43200 > th dose dependent rect. 13 16
514 86.94 precipitation 0.1 43200 > th dose dependent rect. 13 4
521 86.96 temperature 10.0 43200 > th dose dependent rect. 16 1
543 87.02 precipitation 0.1 43200 > th dose independent rect. 16 12
544 87.02 precipitation 0.1 43200 < th dose independent rect. 16 12
547 87.02 precipitation 0.1 43200 < th dose dependent rect. 16 12
564 87.05 temperature 10.0 43200 > th dose dependent rect. 13 5
568 87.06 precipitation 0.1 43200 > th dose dependent sin 8 NA
574 87.07 temperature 30.0 43200 < th dose dependent rect. 16 1
581 87.08 precipitation 0.1 43200 > th dose independent rect. 13 15
587 87.09 radiation 1.0 43200 > th dose independent rect. 17 2
598 87.09 precipitation 0.1 43200 < th dose independent rect. 13 15
600 87.09 precipitation 0.1 43200 < th dose dependent rect. 13 15
604 87.10 temperature 10.0 43200 > th dose dependent rect. 7 1
605 87.10 humidity 70.0 43200 > th dose dependent rect. 10 1
610 87.11 temperature 30.0 43200 < th dose dependent rect. 7 1
614 87.11 temperature 10.0 43200 > th dose dependent rect. 6 12
628 87.13 humidity 90.0 43200 > th dose independent rect. 20 1
636 87.14 temperature 10.0 43200 > th dose dependent rect. 13 1
650 87.15 radiation 1.0 43200 < th dose independent rect. 17 4
652 87.15 radiation 1.0 43200 < th dose independent rect. 17 7
702 87.17 precipitation 0.1 43200 > th dose dependent rect. 17 3
703 87.17 temperature 10.0 43200 > th dose dependent rect. 6 5
735 87.18 temperature 30.0 43200 < th dose dependent rect. 5 14
737 87.18 precipitation 0.1 43200 > th dose dependent rect. 15 14
755 87.19 precipitation 0.1 43200 > th dose dependent rect. 23 21
774 87.21 temperature 10.0 43200 > th dose dependent sin 22 NA
790 87.22 precipitation 0.1 43200 > th dose dependent sin 12 NA
845 87.25 precipitation 0.1 43200 > th dose independent rect. 19 2
856 87.25 precipitation 0.1 43200 > th dose dependent rect. 23 15
914 87.29 radiation 1.0 43200 < th dose independent rect. 14 7
947 87.30 temperature 10.0 43200 > th dose dependent rect. 10 1
963 87.31 precipitation 0.1 43200 < th dose independent rect. 19 2
972 87.31 temperature 30.0 43200 < th dose dependent sin 22 NA
976 87.31 precipitation 0.1 43200 < th dose dependent rect. 19 2