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Os05g0317200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : AMP-dependent synthetase and ligase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.3 (0.0109) R2 : 0.0971
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.161 (0.0229) R2dN8 : 0.125 R2N8 : 0.0971
σ : 0.205
deviance : 19.3
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
13.13 0.17 12.4 -0.46 0.222 0.577 0.0142 -1.32 0.000984 6.2 10.88 665 -- --
14.28 0.176 12.3 -0.243 0.142 0.534 0.281 -- 0.0622 7.36 10.43 945 -- --
13.13 0.169 12.4 -0.461 0.225 0.578 -- -1.33 0.000511 6.15 10.38 653 -- --
14.44 0.177 12.3 -0.236 0.106 0.499 -- -- 0.0624 6.52 7.838 1094 -- --
13.94 0.174 12.4 -0.461 -- 0.513 -- -1.06 0.00261 -- 8.509 1172 -- --
18.26 0.2 12.3 -0.0906 0.124 -- -0.0292 -- 0.148 3.99 -- -- -- --
18.27 0.2 12.3 -0.0902 0.124 -- -- -- 0.148 4.1 -- -- -- --
14.88 0.18 12.4 -0.238 -- 0.499 -- -- 0.0612 -- 5.417 1241 -- --
15.71 0.185 12.3 -- 0.103 0.397 -- -- 0.103 6.07 8.237 1091 -- --
19.11 0.204 12.3 -0.0852 -- -- -- -- 0.151 -- -- -- -- --
18.48 0.201 12.3 -- 0.123 -- -- -- 0.158 4.11 -- -- -- --
16.18 0.187 12.3 -- -- 0.401 -- -- 0.102 -- 5.195 1204 -- --
19.3 0.205 12.3 -- -- -- -- -- 0.161 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 12.79 temperature 15 720 > th dose dependent rect. 19 21
11 12.90 temperature 10 270 > th dose dependent rect. 3 17
12 12.91 temperature 10 270 > th dose dependent rect. 1 21
19 12.94 temperature 10 720 > th dose dependent rect. 1 23
24 13.00 temperature 30 270 < th dose dependent rect. 7 20
27 13.01 temperature 30 720 < th dose dependent rect. 15 21
34 13.02 temperature 30 720 < th dose dependent rect. 16 19
43 13.04 temperature 10 720 > th dose dependent rect. 9 23
51 13.06 temperature 30 720 < th dose dependent rect. 22 22
58 13.08 temperature 10 720 > th dose dependent rect. 12 23
79 13.12 temperature 10 720 > th dose dependent rect. 18 14
89 13.14 temperature 10 720 > th dose dependent no NA NA
122 13.18 temperature 15 720 > th dose dependent rect. 23 23
139 13.20 temperature 15 720 > th dose dependent rect. 14 23
142 13.21 temperature 30 720 < th dose dependent no NA NA
233 13.28 temperature 30 720 < th dose dependent rect. 6 23
307 13.36 temperature 15 720 > th dose dependent rect. 1 15
338 13.39 temperature 15 10 > th dose dependent rect. 12 23
399 13.46 temperature 10 720 > th dose dependent sin 10 NA
400 13.46 temperature 10 1440 > th dose dependent rect. 5 2
409 13.47 temperature 30 1440 < th dose dependent rect. 5 2
420 13.48 temperature 30 720 < th dose dependent sin 10 NA
535 13.56 temperature 30 10 < th dose dependent rect. 9 20
553 13.57 temperature 10 10 > th dose dependent rect. 5 17
621 13.61 temperature 10 1440 > th dose dependent rect. 21 12
682 13.63 temperature 20 720 < th dose dependent rect. 19 11
687 13.63 temperature 30 1440 < th dose dependent rect. 21 12
727 13.64 temperature 25 1440 < th dose dependent rect. 21 9
899 13.68 temperature 15 720 > th dose dependent sin 3 NA
957 13.69 temperature 25 1440 < th dose dependent rect. 21 2