FiT-DB / Search/ Help/ Sample detail

Os05g0316400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.1 (0.0339) R2 : 0.656
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.97 (0.0908) R2dC : 0.405 R2C : 0.51
β3 : 1.05 (0.114) R2dE : 0.0754 R2E : 0.148
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.662 (0.0716) R2dN8 : 0.0854 R2N8 : 0.0521
σ : 0.635
deviance : 185.65
__
_____
C
peak time of C : 20.7
E
wheather : radiation
threshold : 40
memory length : 577
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
176.45 0.624 11.1 0.329 1.92 0.927 -0.538 2.73 -0.601 20.5 41.73 634 -- --
185.23 0.634 11.1 0.271 1.91 1.08 -0.21 -- -0.609 20.7 40.27 611 -- --
177.13 0.62 11.1 0.349 1.95 0.9 -- 2.7 -0.593 20.5 43.35 617 -- --
185.03 0.634 11.1 0.199 1.97 1.07 -- -- -0.64 20.7 39.94 594 -- --
273.87 0.771 11.1 0.0851 -- 2.58 -- 1.41 -0.883 -- -138.9 874 -- --
207.76 0.676 11.1 0.234 2.35 -- 0.215 -- -0.554 19.9 -- -- -- --
207.89 0.675 11.1 0.228 2.35 -- -- -- -0.553 19.9 -- -- -- --
277.78 0.776 11.1 0.0218 -- 2.53 -- -- -0.869 -- -99.27 873 -- --
185.65 0.635 11.1 -- 1.97 1.05 -- -- -0.662 20.7 40 577 -- --
508.45 1.05 11.1 0.204 -- -- -- -- -0.584 -- -- -- -- --
209.26 0.677 11.1 -- 2.35 -- -- -- -0.579 20 -- -- -- --
277.79 0.776 11.1 -- -- 2.53 -- -- -0.872 -- -68.22 873 -- --
509.54 1.05 11.1 -- -- -- -- -- -0.607 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 165.08 wind 7.0 270 < th dose independent rect. 14 15
2 165.96 wind 9.0 270 < th dose independent rect. 22 23
3 166.14 wind 7.0 270 < th dose independent rect. 24 19
4 166.47 radiation 1.0 270 < th dose independent rect. 16 8
5 166.51 radiation 1.0 270 < th dose dependent rect. 16 8
16 168.46 temperature 10.0 270 > th dose dependent rect. 13 15
25 168.91 temperature 10.0 270 > th dose dependent rect. 12 8
26 168.93 wind 7.0 270 < th dose independent rect. 13 6
32 169.08 radiation 10.0 14400 < th dose dependent rect. 22 5
38 169.41 humidity 70.0 270 > th dose independent rect. 19 5
52 169.81 precipitation 0.1 270 < th dose independent rect. 24 19
55 169.81 precipitation 0.1 270 < th dose dependent rect. 24 19
57 169.89 humidity 50.0 270 > th dose independent rect. 6 18
63 170.13 atmosphere 1015.0 270 < th dose independent rect. 24 19
65 170.16 temperature 10.0 270 > th dose independent rect. 19 5
66 170.16 temperature 30.0 270 < th dose independent rect. 19 5
67 170.16 humidity 50.0 270 > th dose independent rect. 19 5
68 170.16 atmosphere 995.0 270 > th dose independent rect. 19 5
69 170.16 radiation 1.0 270 < th dose independent rect. 19 5
74 170.16 temperature 10.0 270 > th dose independent rect. 24 19
81 170.18 wind 1.0 270 > th dose independent rect. 24 19
86 170.33 humidity 50.0 270 > th dose dependent rect. 17 7
87 170.34 wind 9.0 270 < th dose independent rect. 19 5
89 170.41 temperature 10.0 90 > th dose dependent rect. 15 6
103 170.87 wind 1.0 270 > th dose independent rect. 11 8
105 170.89 temperature 15.0 270 > th dose independent rect. 5 9
112 171.04 humidity 90.0 270 < th dose independent rect. 13 6
128 171.33 atmosphere 995.0 270 > th dose independent rect. 24 19
136 171.53 wind 7.0 10 < th dose independent rect. 15 6
143 171.67 atmosphere 1015.0 270 < th dose independent rect. 14 15
160 171.91 humidity 90.0 270 < th dose independent rect. 12 8
171 172.04 precipitation 0.1 270 < th dose independent rect. 14 15
172 172.04 precipitation 0.1 270 < th dose dependent rect. 14 15
173 172.06 humidity 90.0 90 < th dose independent rect. 15 6
180 172.10 radiation 10.0 14400 < th dose dependent rect. 22 3
190 172.17 precipitation 0.1 270 < th dose independent rect. 19 5
191 172.17 precipitation 0.1 270 < th dose dependent rect. 19 5
206 172.32 wind 1.0 270 > th dose independent rect. 19 5
207 172.34 temperature 10.0 270 > th dose dependent rect. 4 9
212 172.37 wind 9.0 10 < th dose independent rect. 3 18
238 172.73 humidity 50.0 270 > th dose independent rect. 4 21
239 172.77 temperature 30.0 270 < th dose dependent rect. 17 7
241 172.77 radiation 1.0 270 < th dose dependent rect. 24 15
247 172.82 radiation 1.0 270 > th dose independent sin 16 NA
251 172.85 temperature 30.0 270 < th dose independent rect. 6 18
255 172.91 precipitation 0.1 30 < th dose independent rect. 3 18
257 172.91 precipitation 0.1 30 < th dose dependent rect. 3 18
264 173.00 radiation 1.0 270 < th dose independent sin 16 NA
265 173.00 wind 1.0 270 > th dose independent rect. 21 1
270 173.05 temperature 10.0 270 > th dose independent rect. 21 1
271 173.05 temperature 30.0 270 < th dose independent rect. 21 1
272 173.05 humidity 50.0 270 > th dose independent rect. 21 1
275 173.05 atmosphere 995.0 270 > th dose independent rect. 21 1
276 173.05 radiation 1.0 270 < th dose independent rect. 21 1
281 173.05 radiation 1.0 270 < th dose independent rect. 24 15
282 173.05 temperature 10.0 270 > th dose independent rect. 22 23
283 173.05 radiation 10.0 270 < th dose dependent rect. 21 1
289 173.09 temperature 30.0 90 < th dose dependent rect. 19 6
292 173.10 radiation 1.0 270 < th dose dependent sin 16 NA
303 173.18 humidity 50.0 10 > th dose dependent rect. 21 5
322 173.20 precipitation 0.1 270 < th dose independent rect. 5 9
323 173.20 precipitation 0.1 270 < th dose dependent rect. 5 9
344 173.23 temperature 30.0 270 < th dose dependent rect. 24 7
354 173.30 radiation 1.0 270 > th dose independent rect. 5 9
388 173.37 atmosphere 995.0 270 > th dose independent rect. 5 9
389 173.37 atmosphere 1015.0 270 < th dose independent rect. 5 9
390 173.37 temperature 10.0 270 > th dose independent rect. 14 15
401 173.39 temperature 30.0 10 < th dose dependent rect. 21 6
422 173.43 wind 9.0 270 < th dose independent rect. 21 1
453 173.69 temperature 30.0 90 < th dose dependent rect. 21 4
455 173.70 temperature 25.0 270 < th dose independent rect. 24 8
473 173.90 temperature 20.0 270 > th dose independent rect. 13 6
476 173.93 temperature 10.0 10 > th dose independent rect. 21 6
477 173.93 temperature 30.0 10 < th dose independent rect. 21 6
478 173.93 humidity 50.0 10 > th dose independent rect. 21 6
481 173.93 atmosphere 995.0 10 > th dose independent rect. 21 6
482 173.93 radiation 1.0 10 < th dose independent rect. 21 6
487 173.93 temperature 10.0 10 > th dose independent rect. 3 18
489 173.93 atmosphere 1015.0 10 < th dose independent rect. 3 18
490 173.93 temperature 30.0 270 < th dose dependent rect. 19 4
492 173.93 radiation 1.0 10 < th dose dependent rect. 21 6
511 174.04 wind 9.0 10 < th dose independent rect. 21 6
514 174.04 radiation 20.0 10 < th dose dependent rect. 3 18
515 174.05 wind 9.0 270 < th dose independent rect. 5 9
591 174.24 precipitation 0.1 270 < th dose independent rect. 21 1
594 174.24 precipitation 0.1 270 < th dose dependent rect. 21 1
616 174.39 temperature 25.0 10 > th dose independent rect. 16 5
628 174.43 radiation 30.0 270 < th dose dependent rect. 24 8
638 174.51 temperature 15.0 270 > th dose independent rect. 19 18
674 174.61 atmosphere 995.0 10 > th dose independent rect. 3 18
676 174.62 temperature 10.0 270 > th dose independent rect. 11 8
677 174.62 atmosphere 1015.0 270 < th dose independent rect. 11 8
679 174.62 temperature 10.0 270 > th dose independent rect. 19 16
680 174.62 atmosphere 995.0 270 > th dose independent rect. 19 16
691 174.65 temperature 10.0 270 > th dose independent rect. 13 6
693 174.65 atmosphere 1010.0 270 < th dose independent rect. 13 6
696 174.65 atmosphere 995.0 270 > th dose independent rect. 19 18
705 174.72 wind 9.0 270 < th dose independent rect. 19 16
706 174.73 precipitation 0.1 270 < th dose independent rect. 13 6
708 174.73 precipitation 0.1 270 < th dose dependent rect. 13 6
710 174.74 temperature 25.0 30 < th dose independent rect. 17 9
712 174.75 humidity 50.0 270 > th dose dependent rect. 21 1
725 174.81 temperature 10.0 1440 > th dose independent rect. 22 5
728 174.81 temperature 30.0 1440 < th dose independent rect. 22 5
732 174.81 humidity 50.0 1440 > th dose independent rect. 22 5
740 174.81 atmosphere 995.0 1440 > th dose independent rect. 22 5
741 174.81 radiation 1.0 1440 < th dose independent rect. 22 5
762 174.81 temperature 10.0 1440 > th dose independent rect. 3 19
765 174.81 radiation 1.0 1440 < th dose dependent rect. 22 5
780 174.84 temperature 30.0 270 < th dose dependent rect. 21 1
782 174.85 precipitation 0.1 270 < th dose independent rect. 11 8
785 174.85 precipitation 0.1 270 < th dose dependent rect. 11 8
786 174.86 humidity 50.0 270 > th dose independent rect. 19 16
825 174.97 wind 9.0 270 < th dose independent rect. 19 18
831 175.00 precipitation 0.1 270 < th dose independent rect. 24 7
832 175.00 precipitation 0.1 270 < th dose dependent rect. 24 7
858 175.05 precipitation 0.1 10 < th dose independent rect. 21 6
859 175.05 precipitation 0.1 10 < th dose dependent rect. 21 6
881 175.08 radiation 20.0 10 < th dose dependent rect. 24 21
915 175.21 radiation 40.0 720 > th dose dependent rect. 13 21
929 175.28 wind 7.0 270 < th dose independent rect. 24 7
958 175.37 atmosphere 1015.0 270 < th dose independent rect. 24 7
959 175.37 wind 1.0 270 > th dose independent rect. 13 16
967 175.40 temperature 10.0 270 > th dose independent rect. 24 7
970 175.40 humidity 50.0 270 > th dose independent rect. 24 7
972 175.40 atmosphere 995.0 270 > th dose independent rect. 24 7
973 175.40 radiation 30.0 270 < th dose independent rect. 24 7
977 175.40 temperature 10.0 270 > th dose independent rect. 7 17