Os05g0315100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os05g0315100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.73 | 0.277 | 11.1 | -0.674 | 1.21 | -1.1 | 0.569 | 0.397 | -0.291 | 17.2 | 9.895 | 211 | -- | -- |
| 35.14 | 0.276 | 11.1 | -0.68 | 1.24 | -1.1 | 0.286 | -- | -0.285 | 17.3 | 9.999 | 193 | -- | -- |
| 35.05 | 0.276 | 11.1 | -0.699 | 1.32 | -1.03 | -- | 0.356 | -0.312 | 17.1 | 10.73 | 181 | -- | -- |
| 35.21 | 0.276 | 11.1 | -0.674 | 1.3 | -1.04 | -- | -- | -0.289 | 17.2 | 10 | 180 | -- | -- |
| 50.13 | 0.33 | 11.1 | -0.704 | -- | -2.04 | -- | -0.129 | -0.338 | -- | 2.98 | 450 | -- | -- |
| 46.85 | 0.321 | 11.1 | -0.662 | 2.17 | -- | 0.00565 | -- | -0.253 | 15.4 | -- | -- | -- | -- |
| 46.85 | 0.321 | 11.1 | -0.662 | 2.17 | -- | -- | -- | -0.253 | 15.4 | -- | -- | -- | -- |
| 49.89 | 0.329 | 11.1 | -0.772 | -- | -2.04 | -- | -- | -0.353 | -- | 2.965 | 453 | -- | -- |
| 47.14 | 0.32 | 11.1 | -- | 1.34 | -0.975 | -- | -- | -0.215 | 17 | 10 | 180 | -- | -- |
| 310.89 | 0.824 | 11.1 | -0.754 | -- | -- | -- | -- | -0.311 | -- | -- | -- | -- | -- |
| 58.4 | 0.357 | 11.1 | -- | 2.18 | -- | -- | -- | -0.18 | 15.4 | -- | -- | -- | -- |
| 64.37 | 0.374 | 11.1 | -- | -- | -2.04 | -- | -- | -0.28 | -- | 6.365 | 438 | -- | -- |
| 325.87 | 0.843 | 11.1 | -- | -- | -- | -- | -- | -0.227 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.32 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 2 | 30.39 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 4 | 30.47 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 19 |
| 5 | 30.47 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 19 |
| 39 | 31.98 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 14 |
| 54 | 32.35 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 67 | 32.68 | humidity | 60.0 | 270 | > th | dose independent | rect. | 16 | 14 |
| 70 | 32.81 | radiation | 10.0 | 270 | < th | dose independent | rect. | 16 | 14 |
| 96 | 33.29 | temperature | 30.0 | 270 | < th | dose independent | rect. | 11 | 9 |
| 115 | 33.60 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 136 | 33.77 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 19 |
| 187 | 34.24 | temperature | 30.0 | 270 | < th | dose independent | rect. | 13 | 7 |
| 247 | 34.69 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 20 |
| 270 | 34.81 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 19 |
| 275 | 34.84 | radiation | 10.0 | 270 | < th | dose independent | rect. | 24 | 21 |
| 279 | 34.86 | humidity | 60.0 | 270 | > th | dose independent | rect. | 1 | 19 |
| 306 | 34.99 | temperature | 30.0 | 10 | < th | dose dependent | sin | 23 | NA |
| 357 | 35.20 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 379 | 35.30 | humidity | 70.0 | 90 | > th | dose independent | rect. | 3 | 19 |
| 424 | 35.46 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 13 |
| 428 | 35.48 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 3 | 20 |
| 467 | 35.65 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 11 |
| 471 | 35.66 | humidity | 60.0 | 270 | > th | dose independent | rect. | 13 | 7 |
| 589 | 35.96 | radiation | 1.0 | 90 | > th | dose independent | rect. | 7 | 12 |
| 615 | 36.01 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 11 |
| 619 | 36.01 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 11 |
| 643 | 36.07 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 15 | 22 |
| 665 | 36.14 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 13 | 10 |
| 767 | 36.40 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 771 | 36.41 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 11 |
| 779 | 36.43 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 11 |
| 780 | 36.43 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 11 |
| 781 | 36.43 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 13 |
| 856 | 36.61 | temperature | 10.0 | 10 | > th | dose dependent | sin | 20 | NA |
| 860 | 36.62 | radiation | 10.0 | 270 | < th | dose dependent | no | NA | NA |
| 897 | 36.70 | humidity | 70.0 | 270 | > th | dose independent | rect. | 17 | 2 |
| 906 | 36.71 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 20 |
| 922 | 36.73 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 13 |
| 969 | 36.83 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 974 | 36.84 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 23 |