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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0314700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.06 (0.0164) R2 : 0.00725
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0631 (0.0346) R2dN8 : 0.00936 R2N8 : 0.00725
σ : 0.309
deviance : 43.89
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
41.45 0.302 3.06 -0.0492 0.0858 0.475 0.108 -2.4 -0.0585 8.9 0.2582 29 -- --
42.44 0.303 3.05 -0.0208 0.0964 0.326 0.224 -- -0.0552 9.19 0.2267 20 -- --
41.48 0.3 3.06 -0.0461 0.0881 0.466 -- -2.44 -0.0596 8.18 0.2639 28 -- --
42.57 0.304 3.05 -0.00523 0.102 0.288 -- -- -0.0577 8.3 0.4 20 -- --
41.9 0.301 3.06 -0.0488 -- 0.505 -- -2.56 -0.0574 -- 0.3007 28 -- --
43.13 0.308 3.05 0.00377 0.114 -- 0.115 -- -0.0635 8.05 -- -- -- --
43.15 0.308 3.05 0.0062 0.117 -- -- -- -0.0641 7.44 -- -- -- --
43.14 0.306 3.06 -0.00627 -- 0.317 -- -- -0.0561 -- 0.4007 20 -- --
42.57 0.304 3.05 -- 0.102 0.287 -- -- -0.0573 8.29 0.4 20 -- --
43.88 0.31 3.06 0.00805 -- -- -- -- -0.0622 -- -- -- -- --
43.15 0.307 3.05 -- 0.117 -- -- -- -0.0648 7.44 -- -- -- --
43.14 0.306 3.06 -- -- 0.312 -- -- -0.0556 -- 0.4001 20 -- --
43.89 0.309 3.06 -- -- -- -- -- -0.0631 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 32.29 wind 1.0 30 < th dose dependent rect. 5 2
5 32.85 wind 1.0 30 < th dose independent rect. 5 2
18 34.28 wind 1.0 30 < th dose dependent rect. 5 7
134 39.53 wind 1.0 30 < th dose dependent sin 2 NA
237 40.55 wind 1.0 30 < th dose independent sin 2 NA
249 40.64 wind 1.0 270 < th dose dependent rect. 3 1
265 40.78 humidity 90.0 10 > th dose independent rect. 13 1
273 40.78 humidity 90.0 10 > th dose dependent rect. 13 1
318 40.87 wind 1.0 270 < th dose dependent rect. 3 3
336 40.92 wind 1.0 90 < th dose dependent rect. 12 1
366 41.09 wind 1.0 30 > th dose independent sin 2 NA
372 41.12 wind 7.0 720 < th dose independent rect. 19 2
380 41.14 humidity 50.0 1440 > th dose independent rect. 16 4
391 41.15 humidity 60.0 1440 < th dose independent rect. 18 1
411 41.16 humidity 60.0 1440 < th dose dependent rect. 18 1
427 41.17 humidity 60.0 1440 > th dose independent rect. 18 2
428 41.17 humidity 50.0 1440 < th dose independent rect. 16 2
435 41.17 humidity 50.0 1440 > th dose independent rect. 16 8
454 41.18 humidity 50.0 1440 > th dose independent rect. 16 11
455 41.18 wind 9.0 720 < th dose dependent rect. 19 2
464 41.19 humidity 50.0 1440 < th dose dependent rect. 16 2
590 41.26 humidity 50.0 1440 > th dose independent rect. 16 17
641 41.31 humidity 80.0 720 > th dose independent rect. 20 1
655 41.31 atmosphere 1010.0 10 < th dose dependent rect. 6 1
662 41.33 wind 1.0 90 < th dose independent rect. 12 1
718 41.35 humidity 60.0 720 > th dose independent rect. 7 2
719 41.35 atmosphere 1015.0 720 < th dose independent rect. 19 2
722 41.36 precipitation 0.1 720 < th dose independent rect. 19 2
725 41.36 precipitation 0.1 720 < th dose dependent rect. 19 2
744 41.40 atmosphere 1010.0 10 < th dose independent rect. 6 1
745 41.40 radiation 1.0 720 > th dose independent rect. 7 2
748 41.41 precipitation 0.1 720 < th dose independent rect. 7 2
749 41.41 radiation 40.0 1440 < th dose independent rect. 16 14
751 41.41 precipitation 0.1 720 < th dose dependent rect. 7 2
752 41.42 wind 7.0 720 < th dose independent rect. 7 2
754 41.42 temperature 10.0 720 > th dose independent rect. 7 2
756 41.42 temperature 10.0 720 > th dose independent rect. 19 2
757 41.42 temperature 30.0 720 < th dose independent rect. 19 2
760 41.42 atmosphere 995.0 720 > th dose independent rect. 7 2
761 41.42 atmosphere 995.0 720 > th dose independent rect. 19 2
762 41.42 atmosphere 1015.0 720 < th dose independent rect. 7 2
763 41.42 radiation 1.0 720 < th dose independent rect. 19 2
768 41.42 temperature 10.0 720 > th dose independent rect. 9 22
769 41.42 temperature 10.0 720 > th dose independent rect. 21 22
771 41.42 radiation 1.0 720 < th dose dependent rect. 19 2
808 41.47 wind 1.0 720 > th dose independent rect. 19 2
810 41.47 wind 9.0 90 < th dose independent rect. 7 12
811 41.47 temperature 15.0 90 > th dose independent rect. 7 12
812 41.47 temperature 25.0 30 > th dose dependent rect. 20 11
819 41.49 temperature 20.0 90 > th dose dependent rect. 5 1
821 41.50 wind 5.0 10 < th dose independent rect. 20 12
823 41.50 wind 9.0 90 < th dose dependent rect. 19 12
824 41.50 wind 9.0 10 < th dose dependent rect. 20 12
825 41.51 wind 7.0 90 < th dose independent rect. 19 12
827 41.51 precipitation 0.1 720 < th dose independent rect. 21 22
843 41.51 precipitation 0.1 720 < th dose dependent rect. 21 22
845 41.52 radiation 10.0 30 < th dose independent rect. 20 11
846 41.52 atmosphere 995.0 90 > th dose independent rect. 7 12
849 41.52 precipitation 0.1 720 < th dose independent rect. 9 22
853 41.52 precipitation 0.1 720 < th dose dependent rect. 9 22
855 41.53 radiation 1.0 90 > th dose independent rect. 5 1
862 41.54 precipitation 0.1 90 < th dose independent rect. 19 12
863 41.54 humidity 50.0 720 > th dose independent rect. 21 22
875 41.54 precipitation 0.1 90 < th dose dependent rect. 19 12
881 41.56 humidity 50.0 720 < th dose independent sin 7 NA
898 41.56 wind 9.0 720 < th dose dependent rect. 2 4
901 41.57 temperature 25.0 270 > th dose independent rect. 4 2
905 41.57 humidity 90.0 10 < th dose independent rect. 8 12
925 41.58 humidity 50.0 720 < th dose independent rect. 11 2
935 41.58 humidity 50.0 720 < th dose dependent rect. 11 4
960 41.59 humidity 50.0 720 < th dose dependent sin 7 NA
961 41.59 humidity 50.0 4320 < th dose dependent rect. 14 1
993 41.60 atmosphere 1000.0 720 > th dose independent rect. 23 10