Os05g0310500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cathepsin B (Fragment).
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Os05g0310500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cathepsin B (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.55 | 0.31 | 12.9 | -0.188 | 3.03 | -1.05 | 0.654 | -0.226 | -0.0424 | 15.7 | 2.848 | 94 | 3.04 | 2.98 |
| 43.63 | 0.308 | 12.9 | -0.181 | 3.04 | -1.05 | 0.724 | -- | -0.0385 | 15.7 | 2.807 | 93 | 3.03 | 2.97 |
| 44.65 | 0.311 | 12.9 | -0.222 | 3.02 | -1.08 | -- | -0.448 | -0.0475 | 15.7 | 2.9 | 92 | 3.05 | 2.98 |
| 45.19 | 0.313 | 12.9 | -0.19 | 3.02 | -1.06 | -- | -- | -0.0453 | 15.7 | 2.788 | 93 | 3 | 3.02 |
| 348.29 | 0.874 | 12.8 | -0.262 | -- | -2.4 | -- | -0.976 | 0.198 | -- | 16.97 | 58 | 2.96 | 4.55 |
| 74.24 | 0.404 | 12.9 | -0.245 | 3.59 | -- | 1.05 | -- | -0.0207 | 16 | -- | -- | -- | -- |
| 77.44 | 0.412 | 12.9 | -0.232 | 3.59 | -- | -- | -- | -0.0148 | 16 | -- | -- | -- | -- |
| 289.98 | 0.793 | 12.9 | -0.0467 | -- | -2.58 | -- | -- | 0.044 | -- | 17.35 | 56 | 1.43 | 5.3 |
| 45.89 | 0.316 | 12.9 | -- | 3.04 | -1.05 | -- | -- | -0.0355 | 15.7 | 2.7 | 95 | 2.98 | 3.04 |
| 783.26 | 1.31 | 12.9 | -0.379 | -- | -- | -- | -- | -0.111 | -- | -- | -- | -- | -- |
| 78.86 | 0.415 | 12.9 | -- | 3.6 | -- | -- | -- | 0.0111 | 16 | -- | -- | -- | -- |
| 272.97 | 0.769 | 12.9 | -- | -- | -2.55 | -- | -- | 0.0997 | -- | 20.7 | 58 | 1.33 | 6.22 |
| 787.05 | 1.31 | 12.9 | -- | -- | -- | -- | -- | -0.0686 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.70 | wind | 3.0 | 90 | < th | dose independent | rect. | 3 | 3 |
| 2 | 44.37 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 3 | 3 |
| 4 | 44.74 | wind | 7.0 | 90 | < th | dose dependent | rect. | 3 | 3 |
| 11 | 45.87 | wind | 7.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 12 | 45.88 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 6 | 21 |
| 13 | 45.88 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 6 | 21 |
| 14 | 45.99 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 3 |
| 15 | 45.99 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 3 |
| 17 | 46.10 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 3 | 3 |
| 22 | 46.25 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 4 |
| 25 | 46.36 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 3 |
| 27 | 46.36 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 3 |
| 28 | 46.36 | humidity | 50.0 | 90 | > th | dose independent | rect. | 3 | 3 |
| 31 | 46.36 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 3 |
| 32 | 46.36 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 3 | 3 |
| 34 | 46.36 | radiation | 20.0 | 90 | < th | dose independent | rect. | 3 | 3 |
| 37 | 46.36 | temperature | 10.0 | 90 | > th | dose independent | rect. | 6 | 21 |
| 41 | 46.47 | wind | 9.0 | 90 | < th | dose independent | rect. | 6 | 21 |
| 43 | 46.54 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 3 |
| 44 | 46.66 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 3 |
| 54 | 46.96 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 3 | 3 |
| 65 | 47.31 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 6 | 21 |
| 74 | 47.76 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 4 |
| 75 | 47.76 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 89 | 48.21 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 91 | 48.21 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 92 | 48.21 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 95 | 48.21 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 96 | 48.21 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 98 | 48.21 | radiation | 20.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 103 | 48.22 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 105 | 48.23 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 120 | 48.56 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 4 |
| 149 | 49.02 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 4 | 2 |
| 153 | 49.18 | radiation | 10.0 | 10 | < th | dose independent | rect. | 4 | 2 |
| 207 | 49.47 | wind | 9.0 | 10 | < th | dose independent | rect. | 6 | 22 |
| 228 | 49.53 | humidity | 80.0 | 10 | > th | dose independent | rect. | 4 | 2 |
| 235 | 49.59 | temperature | 10.0 | 10 | > th | dose independent | rect. | 4 | 2 |
| 237 | 49.59 | temperature | 30.0 | 10 | < th | dose independent | rect. | 4 | 2 |
| 238 | 49.59 | humidity | 50.0 | 10 | > th | dose independent | rect. | 4 | 2 |
| 241 | 49.59 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 4 | 2 |
| 242 | 49.59 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 4 | 2 |
| 247 | 49.59 | temperature | 10.0 | 10 | > th | dose independent | rect. | 6 | 22 |
| 342 | 50.05 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 6 | 22 |
| 374 | 50.25 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 6 | 21 |
| 382 | 50.33 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 4 | 2 |
| 427 | 50.77 | wind | 9.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 428 | 50.77 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 431 | 50.77 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 435 | 50.77 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 440 | 50.77 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 441 | 50.77 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 442 | 50.77 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 447 | 50.77 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 7 | 21 |
| 471 | 50.96 | wind | 1.0 | 270 | > th | dose independent | rect. | 5 | 20 |
| 537 | 51.21 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 599 | 51.53 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 18 |
| 644 | 51.67 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 3 | 3 |
| 650 | 51.71 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 805 | 52.20 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 18 | 3 |
| 918 | 52.53 | humidity | 50.0 | 90 | > th | dose independent | rect. | 6 | 21 |