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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0307200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.05 (0.0444) R2 : 0.359
β1 : 0.975 (0.176) R2dD : 0.0554 R2D : 0.00426
β2 : 1.63 (0.113) R2dC : 0.298 R2C : 0.286
β3 : 1.21 (0.202) R2dE : 0.0724 R2E : 0.014
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.136 (0.103) R2dN8 : 0.00392 R2N8 : -0.0156
σ : 0.807
deviance : 300.56
__
_____
C
peak time of C : 18.6
E
wheather : temperature
threshold : 23.7
memory length : 2175
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
299.2 0.813 4.02 1.2 1.57 1.14 0.416 -1.64 0.195 18.6 25.82 1387 -- --
300.54 0.807 4.05 1.05 1.6 1.17 0.179 -- 0.151 18.7 23.78 2334 -- --
298.88 0.805 4.01 1.27 1.62 1.11 -- -2.07 0.217 18.8 27.74 1090 -- --
300.56 0.807 4.05 0.975 1.63 1.21 -- -- 0.136 18.6 23.7 2175 -- --
428.71 0.964 3.96 1.3 -- 1.22 -- -2.07 0.218 -- 27.5 1337 -- --
323.87 0.844 4.12 0.511 1.61 -- 0.242 -- -0.147 18.5 -- -- -- --
324.02 0.843 4.12 0.508 1.61 -- -- -- -0.147 18.5 -- -- -- --
430.14 0.966 4.01 1.01 -- 1.28 -- -- 0.149 -- 25.09 2779 -- --
319.83 0.833 4.09 -- 1.58 0.846 -- -- -0.0571 18.5 24.7 1392 -- --
459.13 1 4.08 0.467 -- -- -- -- -0.18 -- -- -- -- --
330.81 0.851 4.13 -- 1.61 -- -- -- -0.203 18.5 -- -- -- --
449.46 0.987 4.08 -- -- 1 -- -- -0.0587 -- 25.7 1359 -- --
464.88 1.01 4.1 -- -- -- -- -- -0.232 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 294.62 temperature 25 1440 < th dose dependent rect. 12 1
4 295.02 radiation 10 14400 < th dose dependent rect. 1 4
10 295.66 radiation 10 14400 < th dose dependent rect. 22 7
13 295.98 radiation 10 14400 < th dose dependent rect. 4 1
16 296.15 temperature 25 1440 < th dose dependent rect. 12 8
18 296.23 radiation 1 1440 > th dose independent rect. 13 2
26 296.42 radiation 1 1440 < th dose independent rect. 13 2
27 296.42 radiation 1 1440 < th dose dependent rect. 13 2
31 296.67 radiation 10 14400 < th dose independent rect. 1 4
33 296.69 wind 5 43200 > th dose independent rect. 14 1
36 296.76 wind 5 43200 < th dose independent rect. 13 2
37 296.78 wind 5 43200 > th dose independent rect. 13 7
38 296.79 atmosphere 1005 43200 < th dose independent rect. 11 1
40 296.82 wind 5 43200 < th dose independent rect. 13 8
43 296.84 atmosphere 1005 43200 > th dose independent rect. 10 2
45 296.84 wind 3 43200 > th dose dependent rect. 14 1
56 296.90 wind 3 43200 > th dose dependent rect. 13 3
58 296.91 temperature 25 1440 < th dose dependent rect. 12 13
65 296.95 wind 5 43200 < th dose independent rect. 13 5
80 297.01 wind 9 43200 < th dose dependent rect. 14 1
92 297.05 radiation 10 14400 < th dose independent rect. 22 7
95 297.07 atmosphere 1005 43200 < th dose independent rect. 10 3
112 297.18 temperature 25 1440 < th dose independent rect. 7 10
115 297.19 temperature 15 270 > th dose dependent rect. 16 18
181 297.51 temperature 25 270 > th dose independent rect. 15 21
188 297.53 atmosphere 1005 43200 < th dose independent rect. 7 8
210 297.59 radiation 10 14400 < th dose independent rect. 4 1
257 297.74 atmosphere 1005 43200 < th dose independent sin 1 NA
260 297.74 temperature 25 1440 < th dose dependent sin 19 NA
273 297.76 temperature 30 720 < th dose dependent rect. 12 21
283 297.79 radiation 1 43200 < th dose dependent rect. 12 1
298 297.82 radiation 40 43200 > th dose independent rect. 10 1
323 297.86 temperature 25 1440 > th dose independent rect. 7 10
328 297.86 temperature 10 720 > th dose dependent rect. 7 21
330 297.87 radiation 1 43200 < th dose independent rect. 12 1
335 297.87 atmosphere 1010 43200 < th dose dependent rect. 10 1
392 297.97 atmosphere 1005 43200 > th dose independent sin 1 NA
407 297.98 radiation 1 14400 > th dose independent rect. 4 1
424 297.98 temperature 10 1440 > th dose dependent rect. 12 1
425 297.98 radiation 1 14400 > th dose dependent rect. 4 1
436 297.99 humidity 60 43200 > th dose independent rect. 11 1
462 298.02 humidity 70 43200 < th dose dependent rect. 11 1
470 298.04 radiation 40 43200 < th dose independent rect. 9 1
514 298.08 radiation 20 43200 > th dose dependent rect. 9 1
553 298.13 humidity 80 43200 > th dose independent rect. 12 1
581 298.16 humidity 70 43200 < th dose independent rect. 10 1
592 298.16 atmosphere 1010 43200 < th dose dependent rect. 6 1
619 298.19 wind 3 43200 < th dose dependent rect. 21 1
676 298.23 atmosphere 1010 43200 < th dose dependent rect. 19 1
716 298.26 atmosphere 1010 43200 < th dose dependent rect. 6 14
727 298.28 atmosphere 1005 43200 < th dose independent no NA NA
742 298.29 atmosphere 1005 43200 < th dose independent rect. 15 23
746 298.29 atmosphere 1010 43200 < th dose dependent rect. 10 10
760 298.30 atmosphere 1005 43200 < th dose independent rect. 9 23
761 298.30 atmosphere 1005 43200 < th dose independent rect. 13 23
771 298.31 radiation 1 43200 > th dose independent rect. 12 1
785 298.31 atmosphere 1005 43200 < th dose independent rect. 18 23
804 298.32 humidity 70 43200 < th dose dependent rect. 16 1
818 298.33 temperature 25 1440 < th dose independent sin 0 NA
819 298.33 atmosphere 1005 43200 < th dose independent rect. 19 1
826 298.33 atmosphere 1010 43200 < th dose dependent sin 23 NA
835 298.34 humidity 70 43200 < th dose independent rect. 7 4
877 298.35 atmosphere 1010 43200 < th dose dependent rect. 10 7
944 298.38 atmosphere 1010 43200 < th dose dependent rect. 2 10