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Os05g0307200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
299.2 | 0.813 | 4.02 | 1.2 | 1.57 | 1.14 | 0.416 | -1.64 | 0.195 | 18.6 | 25.82 | 1387 | -- | -- |
300.54 | 0.807 | 4.05 | 1.05 | 1.6 | 1.17 | 0.179 | -- | 0.151 | 18.7 | 23.78 | 2334 | -- | -- |
298.88 | 0.805 | 4.01 | 1.27 | 1.62 | 1.11 | -- | -2.07 | 0.217 | 18.8 | 27.74 | 1090 | -- | -- |
300.56 | 0.807 | 4.05 | 0.975 | 1.63 | 1.21 | -- | -- | 0.136 | 18.6 | 23.7 | 2175 | -- | -- |
428.71 | 0.964 | 3.96 | 1.3 | -- | 1.22 | -- | -2.07 | 0.218 | -- | 27.5 | 1337 | -- | -- |
323.87 | 0.844 | 4.12 | 0.511 | 1.61 | -- | 0.242 | -- | -0.147 | 18.5 | -- | -- | -- | -- |
324.02 | 0.843 | 4.12 | 0.508 | 1.61 | -- | -- | -- | -0.147 | 18.5 | -- | -- | -- | -- |
430.14 | 0.966 | 4.01 | 1.01 | -- | 1.28 | -- | -- | 0.149 | -- | 25.09 | 2779 | -- | -- |
319.83 | 0.833 | 4.09 | -- | 1.58 | 0.846 | -- | -- | -0.0571 | 18.5 | 24.7 | 1392 | -- | -- |
459.13 | 1 | 4.08 | 0.467 | -- | -- | -- | -- | -0.18 | -- | -- | -- | -- | -- |
330.81 | 0.851 | 4.13 | -- | 1.61 | -- | -- | -- | -0.203 | 18.5 | -- | -- | -- | -- |
449.46 | 0.987 | 4.08 | -- | -- | 1 | -- | -- | -0.0587 | -- | 25.7 | 1359 | -- | -- |
464.88 | 1.01 | 4.1 | -- | -- | -- | -- | -- | -0.232 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance![]() |
Histogram![]() ![]() |
Local optima within top1000 grid-points
rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
---|---|---|---|---|---|---|---|---|---|
1 | 294.62 | temperature | 25 | 1440 | < th | dose dependent | rect. | 12 | 1 |
4 | 295.02 | radiation | 10 | 14400 | < th | dose dependent | rect. | 1 | 4 |
10 | 295.66 | radiation | 10 | 14400 | < th | dose dependent | rect. | 22 | 7 |
13 | 295.98 | radiation | 10 | 14400 | < th | dose dependent | rect. | 4 | 1 |
16 | 296.15 | temperature | 25 | 1440 | < th | dose dependent | rect. | 12 | 8 |
18 | 296.23 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 2 |
26 | 296.42 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 2 |
27 | 296.42 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 2 |
31 | 296.67 | radiation | 10 | 14400 | < th | dose independent | rect. | 1 | 4 |
33 | 296.69 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 1 |
36 | 296.76 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 2 |
37 | 296.78 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 7 |
38 | 296.79 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 11 | 1 |
40 | 296.82 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 8 |
43 | 296.84 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 10 | 2 |
45 | 296.84 | wind | 3 | 43200 | > th | dose dependent | rect. | 14 | 1 |
56 | 296.90 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 3 |
58 | 296.91 | temperature | 25 | 1440 | < th | dose dependent | rect. | 12 | 13 |
65 | 296.95 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 5 |
80 | 297.01 | wind | 9 | 43200 | < th | dose dependent | rect. | 14 | 1 |
92 | 297.05 | radiation | 10 | 14400 | < th | dose independent | rect. | 22 | 7 |
95 | 297.07 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 10 | 3 |
112 | 297.18 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 10 |
115 | 297.19 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 18 |
181 | 297.51 | temperature | 25 | 270 | > th | dose independent | rect. | 15 | 21 |
188 | 297.53 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 7 | 8 |
210 | 297.59 | radiation | 10 | 14400 | < th | dose independent | rect. | 4 | 1 |
257 | 297.74 | atmosphere | 1005 | 43200 | < th | dose independent | sin | 1 | NA |
260 | 297.74 | temperature | 25 | 1440 | < th | dose dependent | sin | 19 | NA |
273 | 297.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 21 |
283 | 297.79 | radiation | 1 | 43200 | < th | dose dependent | rect. | 12 | 1 |
298 | 297.82 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 1 |
323 | 297.86 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 10 |
328 | 297.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 21 |
330 | 297.87 | radiation | 1 | 43200 | < th | dose independent | rect. | 12 | 1 |
335 | 297.87 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 10 | 1 |
392 | 297.97 | atmosphere | 1005 | 43200 | > th | dose independent | sin | 1 | NA |
407 | 297.98 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 1 |
424 | 297.98 | temperature | 10 | 1440 | > th | dose dependent | rect. | 12 | 1 |
425 | 297.98 | radiation | 1 | 14400 | > th | dose dependent | rect. | 4 | 1 |
436 | 297.99 | humidity | 60 | 43200 | > th | dose independent | rect. | 11 | 1 |
462 | 298.02 | humidity | 70 | 43200 | < th | dose dependent | rect. | 11 | 1 |
470 | 298.04 | radiation | 40 | 43200 | < th | dose independent | rect. | 9 | 1 |
514 | 298.08 | radiation | 20 | 43200 | > th | dose dependent | rect. | 9 | 1 |
553 | 298.13 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 1 |
581 | 298.16 | humidity | 70 | 43200 | < th | dose independent | rect. | 10 | 1 |
592 | 298.16 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 6 | 1 |
619 | 298.19 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 1 |
676 | 298.23 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 19 | 1 |
716 | 298.26 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 6 | 14 |
727 | 298.28 | atmosphere | 1005 | 43200 | < th | dose independent | no | NA | NA |
742 | 298.29 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 15 | 23 |
746 | 298.29 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 10 | 10 |
760 | 298.30 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 9 | 23 |
761 | 298.30 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 13 | 23 |
771 | 298.31 | radiation | 1 | 43200 | > th | dose independent | rect. | 12 | 1 |
785 | 298.31 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 18 | 23 |
804 | 298.32 | humidity | 70 | 43200 | < th | dose dependent | rect. | 16 | 1 |
818 | 298.33 | temperature | 25 | 1440 | < th | dose independent | sin | 0 | NA |
819 | 298.33 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 19 | 1 |
826 | 298.33 | atmosphere | 1010 | 43200 | < th | dose dependent | sin | 23 | NA |
835 | 298.34 | humidity | 70 | 43200 | < th | dose independent | rect. | 7 | 4 |
877 | 298.35 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 10 | 7 |
944 | 298.38 | atmosphere | 1010 | 43200 | < th | dose dependent | rect. | 2 | 10 |