Os05g0305900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os05g0305900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.22 | 0.294 | 9.63 | 0.426 | 0.473 | -0.554 | 0.857 | 1.64 | 0.0312 | 22.5 | 25.14 | 1421 | -- | -- |
| 39.71 | 0.293 | 9.66 | 0.144 | 0.484 | -0.445 | 0.943 | -- | 0.0768 | 22.2 | 22.78 | 12293 | -- | -- |
| 42.19 | 0.303 | 9.63 | 0.423 | 0.468 | -0.557 | -- | 1.77 | 0.0331 | 22.4 | 25.17 | 1418 | -- | -- |
| 42.22 | 0.303 | 9.64 | 0.264 | 0.469 | -0.539 | -- | -- | 0.108 | 22.1 | 21.23 | 28989 | -- | -- |
| 55.39 | 0.347 | 9.62 | 0.434 | -- | -0.54 | -- | 1.8 | 0.0373 | -- | 25.1 | 1503 | -- | -- |
| 46.71 | 0.32 | 9.7 | -0.175 | 0.451 | -- | 0.856 | -- | -0.132 | 22.3 | -- | -- | -- | -- |
| 49.63 | 0.33 | 9.7 | -0.208 | 0.449 | -- | -- | -- | -0.134 | 22.1 | -- | -- | -- | -- |
| 53.86 | 0.343 | 9.67 | -0.0929 | -- | -0.574 | -- | -- | -0.0426 | -- | 21.23 | 28989 | -- | -- |
| 42.35 | 0.303 | 9.66 | -- | 0.46 | -0.488 | -- | -- | 0.0482 | 22 | 19.8 | 8906 | -- | -- |
| 61.82 | 0.367 | 9.69 | -0.202 | -- | -- | -- | -- | -0.133 | -- | -- | -- | -- | -- |
| 50.77 | 0.333 | 9.69 | -- | 0.448 | -- | -- | -- | -0.11 | 22.1 | -- | -- | -- | -- |
| 54.08 | 0.344 | 9.66 | -- | -- | -0.593 | -- | -- | -0.0298 | -- | 21.23 | 28989 | -- | -- |
| 62.89 | 0.37 | 9.68 | -- | -- | -- | -- | -- | -0.111 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.59 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 2 | 37.64 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 4 | 37.74 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 6 | 37.76 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 11 | 37.79 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 13 | 37.80 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 13 | 16 |
| 16 | 37.81 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 19 | 37.81 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 1 | 10 |
| 20 | 37.81 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 1 | 10 |
| 34 | 37.83 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 43 | 37.85 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 14 | 13 |
| 50 | 37.86 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 67 | 37.87 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 87 | 37.89 | humidity | 90.0 | 43200 | > th | dose dependent | sin | 15 | NA |
| 93 | 37.90 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 142 | 37.92 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 174 | 37.94 | humidity | 90.0 | 43200 | > th | dose independent | sin | 14 | NA |
| 175 | 37.94 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 176 | 37.94 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 180 | 37.94 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 21 | 5 |
| 201 | 37.95 | temperature | 25.0 | 14400 | > th | dose independent | sin | 7 | NA |
| 207 | 37.95 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 226 | 37.95 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 18 | 18 |
| 242 | 37.96 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 264 | 37.96 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 282 | 37.97 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 16 | 12 |
| 286 | 37.97 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 13 | 16 |
| 302 | 37.98 | temperature | 25.0 | 14400 | < th | dose independent | sin | 7 | NA |
| 327 | 37.98 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 14 | 14 |
| 527 | 38.04 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 667 | 38.09 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 706 | 38.10 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 751 | 38.11 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 796 | 38.12 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 815 | 38.12 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 833 | 38.13 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 834 | 38.13 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 837 | 38.13 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 853 | 38.13 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 859 | 38.13 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 9 | 4 |
| 872 | 38.13 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 877 | 38.14 | humidity | 90.0 | 43200 | < th | dose independent | sin | 14 | NA |
| 898 | 38.14 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 16 | 2 |
| 1000 | 38.16 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 20 | 20 |