Os05g0305600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os05g0305600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.44 | 0.31 | 8.46 | 2.41 | 0.428 | -0.533 | 0.108 | -1.41 | 0.911 | 2.17 | 62.87 | 5849 | -- | -- |
| 46.38 | 0.317 | 8.47 | 2.37 | 0.431 | -0.55 | 0.113 | -- | 0.885 | 2.19 | 62.34 | 5671 | -- | -- |
| 43.44 | 0.307 | 8.45 | 2.41 | 0.424 | -0.533 | -- | -1.45 | 0.913 | 2.17 | 62.69 | 5934 | -- | -- |
| 44.39 | 0.31 | 8.46 | 2.59 | 0.428 | -0.642 | -- | -- | 0.912 | 2.11 | 50 | 6812 | -- | -- |
| 53.66 | 0.341 | 8.45 | 2.4 | -- | -0.573 | -- | -1.29 | 0.917 | -- | 63 | 6192 | -- | -- |
| 51.14 | 0.335 | 8.45 | 2.41 | 0.412 | -- | 0.0494 | -- | 0.947 | 2.15 | -- | -- | -- | -- |
| 51.15 | 0.335 | 8.45 | 2.41 | 0.412 | -- | -- | -- | 0.947 | 2.17 | -- | -- | -- | -- |
| 53.89 | 0.342 | 8.45 | 2.61 | -- | -0.627 | -- | -- | 0.952 | -- | 50.31 | 7328 | -- | -- |
| 98.46 | 0.462 | 8.55 | -- | 0.454 | -1.87 | -- | -- | 0.647 | 4.11 | 61 | 47520 | -- | -- |
| 61.28 | 0.366 | 8.45 | 2.42 | -- | -- | -- | -- | 0.957 | -- | -- | -- | -- | -- |
| 203.81 | 0.668 | 8.51 | -- | 0.458 | -- | -- | -- | 0.679 | 2.28 | -- | -- | -- | -- |
| 100.61 | 0.467 | 8.58 | -- | -- | -2.04 | -- | -- | 0.364 | -- | 56.77 | 47520 | -- | -- |
| 216.27 | 0.686 | 8.51 | -- | -- | -- | -- | -- | 0.688 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.72 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 4 |
| 2 | 34.84 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 1 | 3 |
| 4 | 35.25 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 4 |
| 5 | 35.29 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 6 | 35.29 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 7 | 35.37 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 11 | 36.04 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 12 | 36.06 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 13 | 36.07 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 18 |
| 14 | 36.10 | wind | 1.0 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 19 | 36.17 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 18 |
| 22 | 36.21 | wind | 1.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 23 | 36.23 | wind | 1.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 24 | 36.24 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 20 |
| 26 | 36.27 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 29 | 36.28 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 30 | 36.29 | wind | 1.0 | 43200 | < th | dose independent | rect. | 6 | 8 |
| 32 | 36.30 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 33 | 36.32 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 18 |
| 36 | 36.36 | wind | 1.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 43 | 36.41 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 44 | 36.41 | wind | 1.0 | 43200 | > th | dose independent | rect. | 6 | 3 |
| 45 | 36.41 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 13 | 19 |
| 65 | 36.46 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 9 |
| 74 | 36.49 | wind | 1.0 | 43200 | > th | dose independent | rect. | 6 | 8 |
| 75 | 36.49 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 79 | 36.51 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 98 | 36.52 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 7 | 6 |
| 105 | 36.56 | wind | 1.0 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 113 | 36.58 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 11 | 2 |
| 134 | 36.60 | wind | 1.0 | 43200 | > th | dose independent | rect. | 5 | 12 |
| 166 | 36.61 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 16 |
| 175 | 36.64 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 208 | 36.69 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 14 |
| 210 | 36.70 | radiation | 30.0 | 43200 | > th | dose independent | sin | 14 | NA |
| 212 | 36.71 | wind | 1.0 | 14400 | < th | dose independent | sin | 3 | NA |
| 240 | 36.75 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 4 | 16 |
| 256 | 36.78 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 258 | 36.79 | wind | 1.0 | 14400 | > th | dose independent | sin | 3 | NA |
| 268 | 36.80 | radiation | 20.0 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 304 | 36.84 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 6 |
| 341 | 36.89 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 362 | 36.89 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 9 |
| 363 | 36.89 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 11 |
| 397 | 36.93 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 422 | 36.95 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 431 | 36.96 | wind | 1.0 | 14400 | < th | dose independent | rect. | 15 | 19 |
| 461 | 36.99 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 12 | 22 |
| 475 | 37.01 | wind | 1.0 | 14400 | < th | dose dependent | sin | 2 | NA |
| 505 | 37.03 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 21 |
| 524 | 37.06 | wind | 1.0 | 14400 | < th | dose independent | rect. | 12 | 22 |
| 531 | 37.07 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 555 | 37.10 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 14 | 20 |
| 580 | 37.11 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 17 | 18 |
| 603 | 37.15 | wind | 1.0 | 43200 | < th | dose independent | rect. | 5 | 21 |
| 612 | 37.16 | radiation | 10.0 | 43200 | < th | dose dependent | sin | 9 | NA |
| 615 | 37.16 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 18 | 15 |
| 677 | 37.19 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 17 | 20 |
| 712 | 37.23 | wind | 1.0 | 14400 | > th | dose independent | rect. | 15 | 19 |
| 725 | 37.24 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 743 | 37.26 | wind | 1.0 | 14400 | < th | dose independent | rect. | 15 | 22 |
| 761 | 37.27 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 797 | 37.30 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 14 | 2 |
| 806 | 37.31 | wind | 1.0 | 14400 | > th | dose independent | rect. | 12 | 22 |
| 855 | 37.34 | radiation | 10.0 | 43200 | < th | dose dependent | sin | 5 | NA |
| 884 | 37.36 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 15 | 20 |
| 888 | 37.37 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 935 | 37.39 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 953 | 37.39 | wind | 1.0 | 14400 | > th | dose independent | rect. | 15 | 22 |
| 971 | 37.41 | wind | 1.0 | 14400 | < th | dose independent | no | NA | NA |
| 972 | 37.41 | radiation | 20.0 | 43200 | > th | dose independent | no | NA | NA |
| 973 | 37.41 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 7 | 10 |