Os05g0305300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os05g0305300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.7 | 0.224 | 11.3 | 1.12 | 0.0266 | -0.151 | -0.275 | 2.31 | 0.318 | 12.5 | 20.3 | 1656 | -- | -- |
| 27 | 0.242 | 11.3 | 0.559 | 0.0507 | -0.173 | -0.239 | -- | 0.192 | 10.6 | 14.68 | 19761 | -- | -- |
| 22.99 | 0.223 | 11.3 | 1.14 | 0.029 | -0.161 | -- | 2.39 | 0.324 | 10.9 | 20.7 | 1657 | -- | -- |
| 26.62 | 0.24 | 11.4 | 0.209 | 0.0278 | 0.216 | -- | -- | 0.0771 | 12.7 | 33.53 | 47520 | -- | -- |
| 23.04 | 0.224 | 11.3 | 1.14 | -- | -0.168 | -- | 2.4 | 0.325 | -- | 20.8 | 1701 | -- | -- |
| 27.48 | 0.246 | 11.4 | 0.438 | 0.0289 | -- | -0.281 | -- | 0.124 | 11.8 | -- | -- | -- | -- |
| 27.79 | 0.247 | 11.4 | 0.426 | 0.0396 | -- | -- | -- | 0.122 | 9.12 | -- | -- | -- | -- |
| 26.65 | 0.24 | 11.4 | 0.191 | -- | 0.223 | -- | -- | 0.0666 | -- | 33.5 | 47520 | -- | -- |
| 26.98 | 0.242 | 11.4 | -- | 0.0446 | 0.322 | -- | -- | 0.035 | 9.12 | 33.64 | 47520 | -- | -- |
| 27.88 | 0.247 | 11.4 | 0.426 | -- | -- | -- | -- | 0.122 | -- | -- | -- | -- | -- |
| 32.57 | 0.267 | 11.4 | -- | 0.0408 | -- | -- | -- | 0.0743 | 8.33 | -- | -- | -- | -- |
| 27.09 | 0.242 | 11.4 | -- | -- | 0.321 | -- | -- | 0.0353 | -- | 33.65 | 47520 | -- | -- |
| 32.66 | 0.267 | 11.4 | -- | -- | -- | -- | -- | 0.0747 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.66 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 4 | 21.84 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 5 |
| 12 | 21.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 34 | 22.05 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 150 | 22.65 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 157 | 22.67 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 163 | 22.69 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 167 | 22.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 222 | 22.84 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 5 |
| 265 | 22.92 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 286 | 22.96 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 296 | 22.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 298 | 22.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 310 | 22.99 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 323 | 23.01 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 5 |
| 363 | 23.09 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 2 |
| 367 | 23.10 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 2 |
| 491 | 23.22 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 497 | 23.23 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 13 | 2 |
| 500 | 23.23 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 502 | 23.23 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 572 | 23.27 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 589 | 23.28 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 620 | 23.30 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 688 | 23.33 | temperature | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 751 | 23.37 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 795 | 23.39 | temperature | 25 | 1440 | < th | dose independent | sin | 16 | NA |
| 907 | 23.44 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 6 |
| 958 | 23.46 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 7 |
| 977 | 23.47 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 1 |