FiT-DB / Search/ Help/ Sample detail
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Os05g0305100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transcription factor IIIB 90 kDa subunit (TFIIIB90) (hTFIIIB90) (B- related factor 1) (BRF-1) (hBRF) (TATA box-binding protein-associated factor, RNA polymerase III, subunit 2) (TAF3B2). Splice isoform 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.89 | 0.261 | 10.2 | -0.436 | 0.422 | 0.151 | -0.888 | 0.877 | -0.0921 | 9.92 | 30.4 | 690 | -- | -- |
| 30.98 | 0.259 | 10.2 | -0.504 | 0.432 | 0.217 | -0.992 | -- | -0.0939 | 9.93 | 30.4 | 680 | -- | -- |
| 33.72 | 0.27 | 10.2 | -0.376 | 0.444 | 0.0657 | -- | 2.26 | -0.0894 | 9.55 | 32.13 | 679 | -- | -- |
| 33.86 | 0.271 | 10.2 | -0.536 | 0.453 | 0.313 | -- | -- | -0.0977 | 9.29 | 31.2 | 657 | -- | -- |
| 44.33 | 0.31 | 10.2 | -0.432 | -- | -0.0191 | -- | 1.3 | -0.106 | -- | 31.61 | 671 | -- | -- |
| 32.25 | 0.266 | 10.2 | -0.473 | 0.375 | -- | -0.963 | -- | -0.114 | 10.2 | -- | -- | -- | -- |
| 35.94 | 0.281 | 10.2 | -0.512 | 0.381 | -- | -- | -- | -0.117 | 10.1 | -- | -- | -- | -- |
| 43.47 | 0.307 | 10.2 | -0.546 | -- | 0.18 | -- | -- | -0.162 | -- | 31.9 | 7289 | -- | -- |
| 41.56 | 0.3 | 10.2 | -- | 0.432 | 0.225 | -- | -- | -0.0467 | 9.78 | 32.33 | 676 | -- | -- |
| 44.72 | 0.312 | 10.2 | -0.517 | -- | -- | -- | -- | -0.117 | -- | -- | -- | -- | -- |
| 42.84 | 0.306 | 10.2 | -- | 0.384 | -- | -- | -- | -0.0596 | 10.2 | -- | -- | -- | -- |
| 45.68 | 0.315 | 10.2 | -- | -- | -0.334 | -- | -- | -0.0596 | -- | 34.79 | 47520 | -- | -- |
| 51.76 | 0.336 | 10.2 | -- | -- | -- | -- | -- | -0.0598 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.87 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 18 | 9 |
| 7 | 28.88 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 18 | 13 |
| 22 | 29.11 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 16 | 7 |
| 41 | 29.46 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 43 | 29.47 | humidity | 80.0 | 30 | < th | dose dependent | rect. | 18 | 1 |
| 45 | 29.49 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 68 | 29.74 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 18 | 1 |
| 69 | 29.75 | temperature | 25.0 | 30 | > th | dose independent | rect. | 18 | 5 |
| 75 | 29.76 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 18 | 2 |
| 79 | 29.77 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 83 | 29.79 | temperature | 30.0 | 270 | < th | dose independent | rect. | 14 | 14 |
| 88 | 29.81 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 23 | 16 |
| 89 | 29.82 | wind | 1.0 | 30 | > th | dose dependent | rect. | 18 | 1 |
| 110 | 29.88 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 15 | 4 |
| 114 | 29.90 | wind | 3.0 | 30 | > th | dose independent | rect. | 18 | 1 |
| 117 | 29.91 | temperature | 20.0 | 30 | > th | dose independent | rect. | 18 | 1 |
| 118 | 29.91 | humidity | 80.0 | 30 | < th | dose independent | rect. | 18 | 1 |
| 124 | 29.92 | temperature | 10.0 | 30 | > th | dose independent | rect. | 18 | 1 |
| 126 | 29.92 | humidity | 50.0 | 30 | > th | dose independent | rect. | 18 | 1 |
| 127 | 29.92 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 18 | 1 |
| 129 | 29.92 | radiation | 20.0 | 30 | < th | dose independent | rect. | 18 | 1 |
| 132 | 29.92 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 18 | 1 |
| 134 | 29.92 | temperature | 10.0 | 30 | > th | dose independent | rect. | 19 | 23 |
| 136 | 29.92 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 18 | 1 |
| 141 | 29.94 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 18 | 1 |
| 144 | 29.94 | radiation | 30.0 | 30 | < th | dose dependent | rect. | 18 | 1 |
| 163 | 29.98 | wind | 9.0 | 30 | < th | dose independent | rect. | 18 | 1 |
| 169 | 29.99 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 24 | 13 |
| 173 | 30.01 | wind | 9.0 | 30 | < th | dose dependent | rect. | 18 | 1 |
| 174 | 30.01 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 18 | 1 |
| 178 | 30.02 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 23 | 12 |
| 180 | 30.02 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 23 | 14 |
| 195 | 30.04 | temperature | 30.0 | 270 | < th | dose independent | rect. | 11 | 8 |
| 203 | 30.06 | atmosphere | 995.0 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 205 | 30.06 | temperature | 25.0 | 270 | < th | dose independent | rect. | 24 | 11 |
| 214 | 30.07 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 239 | 30.10 | radiation | 40.0 | 10 | < th | dose independent | rect. | 23 | 13 |
| 240 | 30.10 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 16 | 1 |
| 242 | 30.10 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 11 | 1 |
| 244 | 30.10 | wind | 9.0 | 4320 | < th | dose dependent | rect. | 20 | 3 |
| 254 | 30.13 | temperature | 25.0 | 90 | < th | dose independent | rect. | 19 | 6 |
| 259 | 30.14 | wind | 7.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 262 | 30.14 | temperature | 15.0 | 30 | > th | dose independent | rect. | 23 | 23 |
| 265 | 30.14 | wind | 1.0 | 4320 | > th | dose dependent | rect. | 20 | 3 |
| 266 | 30.14 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 3 |
| 272 | 30.15 | temperature | 30.0 | 270 | < th | dose independent | rect. | 13 | 6 |
| 274 | 30.15 | atmosphere | 1005.0 | 720 | > th | dose dependent | rect. | 23 | 1 |
| 275 | 30.16 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 19 | 23 |
| 297 | 30.19 | humidity | 60.0 | 270 | > th | dose independent | rect. | 15 | 14 |
| 303 | 30.20 | radiation | 30.0 | 720 | > th | dose independent | rect. | 11 | 1 |
| 304 | 30.20 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 6 | 9 |
| 313 | 30.21 | temperature | 25.0 | 30 | > th | dose independent | rect. | 18 | 8 |
| 316 | 30.21 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 4 | 10 |
| 330 | 30.22 | temperature | 25.0 | 90 | > th | dose independent | rect. | 16 | 11 |
| 331 | 30.22 | atmosphere | 1010.0 | 270 | < th | dose dependent | sin | 5 | NA |
| 339 | 30.23 | temperature | 25.0 | 270 | < th | dose independent | rect. | 15 | 9 |
| 341 | 30.23 | wind | 9.0 | 30 | < th | dose independent | rect. | 19 | 23 |
| 342 | 30.23 | humidity | 50.0 | 270 | > th | dose independent | rect. | 22 | 23 |
| 351 | 30.24 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 5 |
| 352 | 30.24 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 5 |
| 362 | 30.25 | wind | 7.0 | 30 | < th | dose independent | rect. | 23 | 23 |
| 377 | 30.26 | atmosphere | 1010.0 | 720 | < th | dose dependent | rect. | 24 | 7 |
| 386 | 30.27 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 18 | 1 |
| 387 | 30.27 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 18 | 1 |
| 396 | 30.28 | temperature | 25.0 | 270 | > th | dose dependent | sin | 13 | NA |
| 403 | 30.29 | temperature | 30.0 | 10 | < th | dose independent | rect. | 18 | 1 |
| 406 | 30.29 | temperature | 25.0 | 10 | < th | dose independent | rect. | 18 | 8 |
| 432 | 30.30 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 7 |
| 433 | 30.30 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 4 | 11 |
| 449 | 30.32 | wind | 9.0 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 452 | 30.32 | atmosphere | 1005.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 456 | 30.32 | atmosphere | 1010.0 | 720 | < th | dose dependent | rect. | 1 | 2 |
| 469 | 30.33 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 472 | 30.33 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 477 | 30.33 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 479 | 30.33 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 483 | 30.33 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 508 | 30.33 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 20 | 23 |
| 521 | 30.33 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 7 | 6 |
| 526 | 30.33 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 2 | 12 |
| 538 | 30.34 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 4 | 11 |
| 608 | 30.38 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 612 | 30.38 | wind | 9.0 | 4320 | < th | dose dependent | rect. | 20 | 7 |
| 618 | 30.39 | wind | 7.0 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 622 | 30.39 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 11 | 8 |
| 624 | 30.39 | temperature | 25.0 | 90 | > th | dose independent | rect. | 16 | 15 |
| 629 | 30.39 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 11 | 8 |
| 648 | 30.40 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 18 | 1 |
| 649 | 30.40 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 22 | 1 |
| 661 | 30.41 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 663 | 30.41 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 668 | 30.41 | atmosphere | 1005.0 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 674 | 30.42 | temperature | 25.0 | 270 | < th | dose independent | rect. | 21 | 1 |
| 675 | 30.42 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 677 | 30.42 | wind | 9.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 679 | 30.42 | wind | 9.0 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 691 | 30.42 | wind | 3.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 692 | 30.42 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 10 | 1 |
| 695 | 30.42 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 704 | 30.42 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 705 | 30.43 | wind | 3.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 706 | 30.43 | temperature | 30.0 | 720 | < th | dose independent | rect. | 11 | 1 |
| 707 | 30.43 | humidity | 80.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 708 | 30.43 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 22 | 1 |
| 715 | 30.43 | temperature | 30.0 | 90 | < th | dose independent | rect. | 24 | 23 |
| 726 | 30.43 | wind | 7.0 | 4320 | > th | dose dependent | rect. | 18 | 7 |
| 732 | 30.44 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 735 | 30.44 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 740 | 30.44 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 752 | 30.44 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 782 | 30.44 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 24 | 23 |
| 801 | 30.44 | wind | 1.0 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 841 | 30.46 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 22 | 1 |
| 842 | 30.46 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 3 |
| 853 | 30.46 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 854 | 30.46 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 856 | 30.46 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 863 | 30.46 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 16 | 8 |
| 877 | 30.47 | wind | 1.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 882 | 30.47 | temperature | 10.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 884 | 30.47 | temperature | 30.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 885 | 30.47 | humidity | 50.0 | 30 | > th | dose independent | rect. | 22 | 1 |
| 889 | 30.47 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 891 | 30.47 | radiation | 1.0 | 30 | < th | dose independent | rect. | 22 | 1 |
| 913 | 30.47 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 22 | 1 |
| 954 | 30.48 | radiation | 30.0 | 270 | < th | dose independent | rect. | 19 | 16 |
| 955 | 30.48 | radiation | 40.0 | 10 | < th | dose independent | rect. | 23 | 16 |
| 957 | 30.48 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 22 | 1 |
| 959 | 30.48 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 16 | 5 |
| 994 | 30.48 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 2 | 17 |
| 996 | 30.49 | humidity | 90.0 | 30 | < th | dose independent | rect. | 22 | 1 |
