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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0305000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.76 (0.0346) R2 : 0.25
β1 : -1.03 (0.125) R2dD : 0.152 R2D : -0.122
β2 : -- (--) R2dC : -- R2C : --
β3 : -40.6 (3.75) R2dE : 11.7 R2E : -12.4
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -186 (16.6) R2dD*E : 12.5 R2D*E : -11.4
γ1 : -0.0909 (0.0638) R2dN8 : 0.00471 R2N8 : -0.0821
σ : 0.558
deviance : 143.33
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 9.111
memory length : 82
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 12
open length of G : 4.18

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
142.17 0.555 2.74 -1.07 0.201 -40.6 -0.271 -186 -0.0948 9.48 9 90 12 4
1342.8 1.71 3.08 -2.06 1.35 -30.6 -0.418 -- -0.178 0.598 8.337 31 13.9 0.0166
140.94 0.553 2.75 -1.04 0.203 -40.5 -- -186 -0.109 9.99 9.112 85 12 4.14
183.61 0.635 2.95 -0.356 0.206 0.427 -- -- -0.125 11.3 8.579 20 13.9 0.654
143.33 0.558 2.76 -1.03 -- -40.6 -- -186 -0.0909 -- 9.111 82 12 4.18
183.81 0.636 2.95 -0.358 0.21 -- -0.191 -- -0.127 11.4 -- -- -- --
183.97 0.635 2.95 -0.366 0.211 -- -- -- -0.128 11.4 -- -- -- --
160.52 0.59 2.98 -0.589 -- 2.47 -- -- -0.113 -- 8 29 15 0.717
171.8 0.61 2.95 -- 0.209 0.94 -- -- -0.0419 11.8 7.966 29 15 0.633
186.75 0.639 2.95 -0.372 -- -- -- -- -0.13 -- -- -- -- --
187.5 0.641 2.94 -- 0.215 -- -- -- -0.0873 11.5 -- -- -- --
151.36 0.573 2.96 -- -- 3.92 -- -- -0.0356 -- 7.994 29 15 0.633
190.39 0.644 2.94 -- -- -- -- -- -0.089 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 142.17 wind 9 90 > th dose independent rect. 12 4
3 142.45 wind 9 90 > th dose dependent rect. 12 4
4 142.46 radiation 1 10 < th dose dependent rect. 16 1
7 144.08 wind 9 90 > th dose independent rect. 15 1
11 147.27 wind 7 10 > th dose independent rect. 14 2
17 149.92 wind 9 10 > th dose dependent rect. 13 3
27 150.55 radiation 1 10 < th dose independent rect. 16 1
45 151.76 wind 9 10 > th dose dependent rect. 15 1
70 153.61 wind 9 30 > th dose dependent rect. 13 13
88 153.64 wind 9 30 > th dose dependent rect. 13 9
105 154.27 temperature 25 10 < th dose independent rect. 15 1
119 155.26 wind 9 30 > th dose dependent rect. 15 11
137 155.29 wind 9 30 > th dose dependent rect. 15 7
163 156.44 radiation 1 10 < th dose dependent rect. 11 6
213 157.99 radiation 1 720 > th dose independent rect. 4 1
223 157.99 radiation 1 720 > th dose dependent rect. 4 1
279 159.36 wind 9 30 > th dose independent rect. 13 13
302 159.40 wind 9 30 > th dose independent rect. 13 9
318 159.62 radiation 20 4320 < th dose independent rect. 17 13
325 160.13 radiation 20 10 < th dose dependent rect. 15 1
327 160.26 radiation 1 10 < th dose independent rect. 11 6
331 160.27 radiation 40 4320 < th dose dependent rect. 18 9
342 160.48 radiation 40 4320 < th dose dependent rect. 18 6
350 160.58 radiation 40 4320 < th dose dependent rect. 18 3
353 160.66 radiation 20 4320 < th dose independent rect. 17 10
366 160.89 wind 9 30 > th dose dependent sin 13 NA
380 161.03 wind 9 30 > th dose independent rect. 15 11
398 161.06 wind 9 30 > th dose independent rect. 15 7
412 161.07 radiation 20 4320 < th dose independent rect. 17 8
415 161.08 radiation 20 4320 < th dose independent rect. 17 1
450 161.55 radiation 30 4320 < th dose independent rect. 16 4
456 161.60 humidity 60 14400 > th dose independent rect. 19 1
465 161.83 humidity 60 14400 < th dose independent rect. 19 1
477 162.21 humidity 60 14400 < th dose dependent rect. 19 2
516 162.83 humidity 60 14400 > th dose independent rect. 19 11
517 162.84 humidity 60 14400 > th dose independent rect. 19 5
533 163.17 humidity 60 14400 > th dose independent rect. 19 8
563 163.89 humidity 50 43200 > th dose independent rect. 8 1
580 164.41 radiation 1 4320 > th dose dependent rect. 18 1
596 164.79 humidity 70 14400 > th dose independent rect. 24 7
601 164.91 humidity 70 14400 > th dose independent rect. 6 1
603 164.99 humidity 50 43200 < th dose independent rect. 8 1
604 165.01 radiation 40 4320 < th dose independent rect. 11 3
613 165.05 humidity 50 43200 < th dose dependent rect. 16 20
618 165.16 radiation 20 4320 > th dose dependent rect. 11 3
623 165.27 humidity 70 14400 < th dose independent rect. 6 1
649 165.48 radiation 40 14400 > th dose dependent rect. 15 1
675 165.54 humidity 90 14400 < th dose dependent rect. 6 2
688 165.63 radiation 40 4320 < th dose independent rect. 10 19
691 165.64 radiation 40 4320 < th dose independent rect. 10 9
704 165.65 humidity 50 43200 > th dose independent rect. 18 16
722 165.83 atmosphere 1015 4320 > th dose dependent rect. 3 1
746 165.87 radiation 1 4320 > th dose dependent rect. 16 13
774 166.01 atmosphere 1005 30 > th dose dependent rect. 7 1
783 166.08 radiation 30 4320 > th dose dependent rect. 11 6
819 166.15 radiation 1 4320 > th dose dependent rect. 16 3
864 166.19 radiation 40 4320 < th dose dependent rect. 16 8
867 166.20 radiation 40 4320 < th dose dependent rect. 16 4
889 166.25 humidity 50 43200 < th dose independent rect. 18 16
903 166.26 radiation 10 4320 < th dose dependent rect. 16 14
929 166.31 radiation 40 4320 > th dose dependent sin 15 NA
963 166.36 radiation 30 4320 > th dose independent rect. 12 1
971 166.38 radiation 40 14400 > th dose independent rect. 15 1