Os05g0304600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Lipoxygenase (Fragment).
FiT-DB / Search/ Help/ Sample detail
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Os05g0304600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Lipoxygenase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.37 | 0.444 | 13.6 | -1.26 | 0.272 | 1.58 | -0.0646 | -0.0508 | -0.0195 | 23.1 | 16.99 | 5521 | -- | -- |
| 89.28 | 0.44 | 13.6 | -1.26 | 0.295 | 1.58 | -0.068 | -- | -0.0313 | 23.2 | 17.01 | 5688 | -- | -- |
| 89.27 | 0.44 | 13.6 | -1.29 | 0.304 | 1.56 | -- | -0.138 | -0.041 | 23.3 | 17.1 | 5710 | -- | -- |
| 89.29 | 0.44 | 13.6 | -1.25 | 0.302 | 1.57 | -- | -- | -0.0282 | 23.3 | 17 | 5707 | -- | -- |
| 93.51 | 0.45 | 13.6 | -1.31 | -- | 1.57 | -- | -0.183 | -0.023 | -- | 17.39 | 5353 | -- | -- |
| 145.45 | 0.565 | 13.5 | -0.423 | 0.353 | -- | 0.122 | -- | 0.36 | 0.00535 | -- | -- | -- | -- |
| 145.51 | 0.565 | 13.5 | -0.428 | 0.352 | -- | -- | -- | 0.359 | 23.9 | -- | -- | -- | -- |
| 93.4 | 0.45 | 13.6 | -1.25 | -- | 1.63 | -- | -- | -0.00731 | -- | 17 | 5342 | -- | -- |
| 112.32 | 0.494 | 13.5 | -- | 0.335 | 0.945 | -- | -- | 0.349 | 23.6 | 26.25 | 5900 | -- | -- |
| 153.32 | 0.579 | 13.5 | -0.417 | -- | -- | -- | -- | 0.364 | -- | -- | -- | -- | -- |
| 150.33 | 0.574 | 13.5 | -- | 0.347 | -- | -- | -- | 0.407 | 23.8 | -- | -- | -- | -- |
| 118.47 | 0.507 | 13.5 | -- | -- | 0.972 | -- | -- | 0.393 | -- | 26 | 5509 | -- | -- |
| 157.91 | 0.587 | 13.5 | -- | -- | -- | -- | -- | 0.41 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.87 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 17 | 86.78 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 19 | 86.82 | humidity | 90 | 43200 | > th | dose dependent | rect. | 8 | 16 |
| 22 | 86.91 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 19 |
| 27 | 87.03 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 39 | 87.14 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 44 | 87.18 | radiation | 1 | 43200 | < th | dose dependent | rect. | 15 | 4 |
| 45 | 87.19 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 47 | 87.19 | radiation | 1 | 43200 | < th | dose dependent | rect. | 15 | 7 |
| 65 | 87.24 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 83 | 87.29 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 6 |
| 88 | 87.30 | radiation | 1 | 43200 | < th | dose dependent | sin | 16 | NA |
| 91 | 87.32 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 15 |
| 108 | 87.39 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 109 | 87.39 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 14 |
| 124 | 87.40 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 11 |
| 128 | 87.41 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 9 |
| 135 | 87.42 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 153 | 87.46 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 20 |
| 159 | 87.47 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 10 |
| 188 | 87.52 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 11 |
| 195 | 87.52 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 20 |
| 199 | 87.53 | radiation | 1 | 43200 | < th | dose independent | sin | 17 | NA |
| 268 | 87.59 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 11 |
| 301 | 87.61 | radiation | 1 | 43200 | > th | dose independent | sin | 15 | NA |
| 304 | 87.61 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 5 |
| 306 | 87.61 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 8 |
| 307 | 87.61 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 10 |
| 308 | 87.61 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 14 |
| 317 | 87.62 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 12 |
| 353 | 87.65 | temperature | 20 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 375 | 87.66 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 19 |
| 388 | 87.69 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 389 | 87.70 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 400 | 87.70 | temperature | 25 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 432 | 87.72 | humidity | 90 | 43200 | > th | dose dependent | sin | 19 | NA |
| 516 | 87.81 | temperature | 20 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 528 | 87.84 | temperature | 20 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 538 | 87.85 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 543 | 87.86 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 548 | 87.87 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 22 |
| 574 | 87.89 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 22 |
| 587 | 87.91 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 608 | 87.92 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 16 |
| 654 | 87.95 | humidity | 90 | 43200 | < th | dose independent | sin | 19 | NA |
| 660 | 87.95 | radiation | 1 | 43200 | < th | dose independent | rect. | 13 | 22 |
| 685 | 87.96 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 702 | 87.97 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 706 | 87.97 | radiation | 1 | 43200 | > th | dose independent | rect. | 13 | 22 |
| 733 | 87.99 | humidity | 80 | 43200 | < th | dose independent | rect. | 10 | 5 |
| 742 | 87.99 | temperature | 15 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 779 | 88.02 | temperature | 25 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 781 | 88.02 | radiation | 1 | 43200 | < th | dose independent | rect. | 1 | 18 |
| 786 | 88.03 | radiation | 1 | 43200 | < th | dose independent | no | NA | NA |
| 838 | 88.03 | temperature | 15 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 869 | 88.05 | temperature | 25 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 886 | 88.07 | radiation | 1 | 43200 | > th | dose independent | no | NA | NA |
| 888 | 88.07 | humidity | 80 | 43200 | < th | dose independent | rect. | 10 | 7 |
| 948 | 88.08 | humidity | 90 | 43200 | > th | dose dependent | rect. | 8 | 3 |
| 993 | 88.14 | humidity | 90 | 43200 | > th | dose independent | sin | 19 | NA |