Os05g0303000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Stromal 70 kDa heat shock-related protein, chloroplast (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os05g0303000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Stromal 70 kDa heat shock-related protein, chloroplast (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.19 | 0.333 | 15.8 | -0.0947 | 0.629 | -0.945 | 0.915 | -0.912 | -0.2 | 21.3 | 21.94 | 10 | -- | -- |
| 51.97 | 0.336 | 15.8 | -0.0583 | 0.656 | -0.966 | 0.062 | -- | -0.195 | 21.3 | 21.59 | 10 | -- | -- |
| 51.46 | 0.334 | 15.8 | -0.103 | 0.63 | -0.978 | -- | -0.328 | -0.223 | 21.4 | 22.9 | 18 | -- | -- |
| 51.93 | 0.336 | 15.8 | -0.0896 | 0.667 | -0.98 | -- | -- | -0.199 | 21.4 | 21.07 | 10 | -- | -- |
| 59.12 | 0.358 | 15.8 | -0.0908 | -- | -0.796 | -- | -0.838 | -0.227 | -- | 44.17 | 114 | -- | -- |
| 67.61 | 0.385 | 15.8 | -0.078 | 0.628 | -- | 0.66 | -- | -0.187 | 14.8 | -- | -- | -- | -- |
| 69.11 | 0.389 | 15.8 | -0.0624 | 0.629 | -- | -- | -- | -0.183 | 14.7 | -- | -- | -- | -- |
| 60.12 | 0.361 | 15.8 | -0.106 | -- | -0.688 | -- | -- | -0.232 | -- | 25.67 | 121 | -- | -- |
| 52.16 | 0.336 | 15.8 | -- | 0.663 | -0.979 | -- | -- | -0.189 | 21.4 | 20.92 | 10 | -- | -- |
| 92.16 | 0.449 | 15.8 | -0.0892 | -- | -- | -- | -- | -0.199 | -- | -- | -- | -- | -- |
| 69.21 | 0.389 | 15.8 | -- | 0.631 | -- | -- | -- | -0.176 | 14.7 | -- | -- | -- | -- |
| 60.41 | 0.362 | 15.8 | -- | -- | -0.687 | -- | -- | -0.22 | -- | 25.67 | 121 | -- | -- |
| 92.37 | 0.449 | 15.8 | -- | -- | -- | -- | -- | -0.189 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.27 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 9 |
| 5 | 44.91 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 7 | 45.25 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 11 | 45.45 | temperature | 25 | 10 | > th | dose dependent | sin | 5 | NA |
| 31 | 46.40 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 7 |
| 37 | 46.55 | radiation | 20 | 270 | < th | dose dependent | rect. | 24 | 14 |
| 67 | 47.13 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 5 |
| 85 | 47.47 | radiation | 10 | 90 | < th | dose dependent | sin | 2 | NA |
| 123 | 47.84 | temperature | 10 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 124 | 47.85 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 18 |
| 131 | 47.92 | temperature | 10 | 10 | > th | dose dependent | sin | 2 | NA |
| 133 | 47.93 | radiation | 40 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 161 | 48.22 | radiation | 10 | 270 | < th | dose dependent | sin | 5 | NA |
| 186 | 48.41 | radiation | 20 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 189 | 48.42 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 212 | 48.54 | temperature | 30 | 10 | < th | dose dependent | sin | 2 | NA |
| 219 | 48.60 | radiation | 10 | 270 | < th | dose independent | rect. | 24 | 14 |
| 239 | 48.72 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 15 |
| 269 | 48.94 | radiation | 40 | 270 | < th | dose independent | rect. | 11 | 19 |
| 294 | 49.12 | radiation | 1 | 270 | < th | dose independent | sin | 4 | NA |
| 314 | 49.21 | radiation | 10 | 90 | < th | dose independent | rect. | 2 | 17 |
| 327 | 49.26 | radiation | 1 | 270 | > th | dose independent | sin | 4 | NA |
| 387 | 49.47 | radiation | 20 | 10 | < th | dose dependent | rect. | 2 | 19 |
| 435 | 49.60 | radiation | 40 | 270 | < th | dose independent | rect. | 1 | 16 |
| 460 | 49.68 | radiation | 20 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 489 | 49.76 | radiation | 20 | 10 | < th | dose dependent | rect. | 10 | 22 |
| 491 | 49.77 | radiation | 40 | 270 | < th | dose independent | rect. | 10 | 9 |
| 507 | 49.82 | radiation | 20 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 534 | 49.91 | radiation | 10 | 270 | > th | dose independent | sin | 7 | NA |
| 632 | 50.16 | radiation | 10 | 10 | < th | dose independent | rect. | 2 | 19 |
| 647 | 50.19 | radiation | 40 | 270 | < th | dose independent | rect. | 13 | 16 |
| 696 | 50.34 | radiation | 20 | 10 | < th | dose dependent | no | NA | NA |
| 702 | 50.36 | radiation | 1 | 270 | > th | dose independent | rect. | 5 | 10 |
| 703 | 50.36 | radiation | 20 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 723 | 50.39 | radiation | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 765 | 50.51 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 24 | 6 |
| 801 | 50.59 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 9 |
| 822 | 50.64 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 14 |
| 837 | 50.67 | atmosphere | 995 | 270 | > th | dose independent | rect. | 1 | 18 |
| 901 | 50.80 | wind | 9 | 270 | < th | dose independent | rect. | 6 | 18 |
| 905 | 50.80 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 942 | 50.90 | wind | 7 | 270 | < th | dose independent | rect. | 5 | 9 |
| 944 | 50.90 | radiation | 10 | 90 | > th | dose independent | rect. | 17 | 23 |
| 954 | 50.91 | wind | 1 | 270 | > th | dose independent | rect. | 1 | 5 |
| 967 | 50.92 | radiation | 20 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 995 | 50.99 | atmosphere | 995 | 270 | > th | dose independent | rect. | 14 | 15 |