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Os05g0302300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transcription factor jumonji, JmjN domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.3 (0.0151) R2 : 0.0176
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0906 (0.0317) R2dN8 : 0.0227 R2N8 : 0.0176
σ : 0.284
deviance : 36.99
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
19.61 0.208 10.3 0.442 0.36 3.39 -0.2 -7.29 -0.00547 6.68 50.14 211 -- --
20.11 0.209 10.3 0.541 0.36 0.642 -0.152 -- 0.00736 6.54 56.5 341 -- --
19.7 0.207 10.3 0.44 0.364 3.33 -- -7.09 -0.00295 6.69 50.23 206 -- --
20.1 0.209 10.3 0.535 0.373 0.629 -- -- 0.00178 6.59 58.05 345 -- --
25.7 0.236 10.3 0.485 -- 3.45 -- -7.79 -0.00816 -- 49.29 192 -- --
23.54 0.227 10.3 0.601 0.259 -- -0.44 -- -0.0305 6.64 -- -- -- --
24 0.229 10.3 0.595 0.258 -- -- -- -0.0288 6.98 -- -- -- --
25.37 0.235 10.3 0.537 -- 0.354 -- -- 0.0232 -- 62.27 1179 -- --
27.31 0.243 10.3 -- 0.393 0.859 -- -- -0.0504 6.51 55.9 345 -- --
27.5 0.245 10.3 0.6 -- -- -- -- -0.0241 -- -- -- -- --
33.32 0.27 10.3 -- 0.265 -- -- -- -0.0951 6.84 -- -- -- --
31.85 0.263 10.3 -- -- 0.642 -- -- -0.000811 -- 56 2687 -- --
36.99 0.284 10.3 -- -- -- -- -- -0.0906 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 16.64 humidity 50.0 270 > th dose independent rect. 7 18
2 16.72 humidity 50.0 270 > th dose independent rect. 7 16
3 16.80 humidity 60.0 270 > th dose independent rect. 17 9
4 16.85 humidity 50.0 270 > th dose independent rect. 6 20
9 16.99 temperature 30.0 270 < th dose independent rect. 17 9
18 17.34 radiation 1.0 90 > th dose independent sin 13 NA
22 17.51 radiation 1.0 30 < th dose dependent sin 13 NA
32 17.62 radiation 10.0 270 < th dose dependent rect. 17 9
44 17.71 humidity 70.0 10 > th dose independent rect. 18 11
51 17.79 precipitation 0.1 270 < th dose independent rect. 1 6
53 17.79 precipitation 0.1 270 < th dose dependent rect. 1 6
56 17.80 humidity 50.0 270 > th dose dependent rect. 1 6
58 17.81 radiation 1.0 90 < th dose independent sin 13 NA
59 17.81 temperature 10.0 270 > th dose dependent rect. 12 7
60 17.82 humidity 50.0 270 > th dose independent rect. 15 23
62 17.83 temperature 15.0 270 > th dose independent rect. 19 17
65 17.85 precipitation 0.1 270 < th dose independent rect. 12 7
66 17.85 radiation 1.0 270 > th dose independent rect. 13 17
69 17.85 precipitation 0.1 270 < th dose dependent rect. 12 7
72 17.86 wind 9.0 270 < th dose independent rect. 7 18
73 17.86 temperature 15.0 270 > th dose independent rect. 7 18
76 17.87 wind 7.0 270 < th dose independent rect. 1 6
77 17.87 wind 9.0 270 < th dose independent rect. 19 17
79 17.89 wind 1.0 270 > th dose independent rect. 12 7
80 17.89 temperature 10.0 270 > th dose independent rect. 12 7
82 17.89 atmosphere 1015.0 270 < th dose independent rect. 12 7
83 17.89 radiation 10.0 270 < th dose independent rect. 17 9
86 17.89 humidity 50.0 270 > th dose independent rect. 19 17
87 17.89 atmosphere 995.0 270 > th dose independent rect. 19 17
89 17.90 temperature 10.0 270 > th dose independent rect. 1 6
91 17.90 temperature 30.0 270 < th dose independent rect. 1 6
92 17.90 humidity 50.0 270 > th dose independent rect. 1 6
95 17.90 atmosphere 995.0 270 > th dose independent rect. 1 6
96 17.90 atmosphere 1015.0 270 < th dose independent rect. 1 6
97 17.90 radiation 20.0 270 < th dose independent rect. 1 6
108 17.93 radiation 1.0 270 > th dose independent rect. 6 7
111 17.94 temperature 15.0 270 > th dose independent rect. 6 7
114 17.94 radiation 40.0 270 < th dose dependent rect. 1 6
116 17.95 wind 9.0 270 < th dose independent rect. 12 7
119 17.96 precipitation 0.1 270 < th dose independent rect. 23 8
121 17.96 precipitation 0.1 270 < th dose dependent rect. 23 8
127 17.97 radiation 1.0 90 > th dose independent rect. 16 15
132 17.98 wind 9.0 270 < th dose dependent rect. 1 6
134 17.99 precipitation 0.1 270 < th dose independent rect. 19 17
136 17.99 humidity 50.0 270 > th dose dependent rect. 23 8
138 17.99 precipitation 0.1 270 < th dose dependent rect. 19 17
146 18.00 humidity 50.0 270 > th dose independent rect. 18 19
148 18.01 humidity 50.0 270 > th dose independent rect. 6 7
159 18.02 wind 7.0 270 < th dose independent rect. 23 8
168 18.03 temperature 15.0 270 > th dose independent rect. 7 16
173 18.03 precipitation 0.1 270 < th dose independent rect. 7 18
174 18.03 precipitation 0.1 270 < th dose dependent rect. 7 18
176 18.04 wind 9.0 270 < th dose independent rect. 7 16
191 18.06 wind 9.0 270 < th dose independent rect. 6 7
192 18.06 precipitation 0.1 270 < th dose independent rect. 6 7
195 18.06 temperature 10.0 270 > th dose independent rect. 23 8
196 18.06 temperature 30.0 270 < th dose independent rect. 23 8
197 18.06 humidity 50.0 270 > th dose independent rect. 23 8
199 18.06 atmosphere 995.0 270 > th dose independent rect. 23 8
200 18.06 radiation 30.0 270 < th dose independent rect. 23 8
208 18.06 precipitation 0.1 270 < th dose dependent rect. 6 7
216 18.08 atmosphere 995.0 270 > th dose independent rect. 6 7
217 18.08 atmosphere 1015.0 270 < th dose independent rect. 6 7
221 18.08 temperature 10.0 270 > th dose independent rect. 13 17
227 18.10 precipitation 0.1 270 < th dose independent rect. 17 9
229 18.10 precipitation 0.1 270 < th dose independent rect. 7 16
230 18.10 wind 9.0 270 < th dose independent rect. 13 17
232 18.10 precipitation 0.1 270 < th dose dependent rect. 17 9
233 18.10 precipitation 0.1 270 < th dose dependent rect. 7 16
236 18.11 precipitation 0.1 270 < th dose independent rect. 2 15
237 18.11 precipitation 0.1 270 < th dose dependent rect. 2 15
273 18.16 atmosphere 995.0 270 > th dose independent rect. 12 7
293 18.19 wind 7.0 270 < th dose independent rect. 18 8
304 18.21 temperature 10.0 270 > th dose independent rect. 18 8
309 18.21 temperature 10.0 270 > th dose independent rect. 2 16
310 18.21 atmosphere 1015.0 270 < th dose independent rect. 2 16
311 18.21 precipitation 0.1 270 < th dose independent rect. 13 17
314 18.21 precipitation 0.1 270 < th dose dependent rect. 13 17
324 18.23 radiation 1.0 270 > th dose independent rect. 13 6
347 18.24 radiation 1.0 270 > th dose independent sin 16 NA
348 18.24 precipitation 0.1 270 < th dose independent rect. 2 4
353 18.24 precipitation 0.1 270 < th dose dependent rect. 2 4
356 18.25 humidity 90.0 270 < th dose dependent rect. 13 5
406 18.30 atmosphere 995.0 270 > th dose independent rect. 18 8
408 18.30 wind 9.0 270 < th dose independent rect. 2 16
409 18.30 wind 9.0 270 < th dose independent rect. 6 20
419 18.31 wind 5.0 270 < th dose independent rect. 2 4
456 18.35 temperature 10.0 270 > th dose independent rect. 2 4
458 18.35 temperature 30.0 270 < th dose independent rect. 2 4
459 18.35 humidity 50.0 270 > th dose independent rect. 2 4
462 18.35 atmosphere 995.0 270 > th dose independent rect. 2 4
463 18.35 atmosphere 1015.0 270 < th dose independent rect. 2 4
468 18.35 temperature 10.0 270 > th dose independent rect. 6 20
483 18.36 humidity 80.0 270 < th dose dependent rect. 14 3
543 18.41 radiation 1.0 30 > th dose independent rect. 14 19
557 18.42 temperature 30.0 270 < th dose independent rect. 7 18
622 18.47 atmosphere 995.0 270 > th dose independent rect. 13 17
626 18.47 temperature 30.0 270 < th dose independent rect. 6 20
627 18.47 precipitation 0.1 270 < th dose independent rect. 6 20
631 18.47 precipitation 0.1 270 < th dose dependent rect. 6 20
641 18.48 atmosphere 1015.0 270 < th dose independent rect. 7 16
682 18.51 humidity 70.0 270 < th dose independent rect. 13 5
717 18.54 atmosphere 1015.0 270 < th dose independent rect. 19 17
796 18.59 atmosphere 1015.0 270 < th dose independent rect. 7 18
798 18.59 humidity 80.0 30 < th dose dependent sin 13 NA
851 18.63 atmosphere 995.0 270 > th dose independent rect. 2 16
868 18.64 atmosphere 995.0 270 > th dose independent rect. 7 18
881 18.65 wind 1.0 270 > th dose independent rect. 6 7
893 18.66 humidity 70.0 30 > th dose independent sin 13 NA
904 18.66 temperature 10.0 270 > th dose dependent rect. 19 17
917 18.67 wind 1.0 270 > th dose independent rect. 13 17
939 18.68 radiation 1.0 270 < th dose independent rect. 2 9
967 18.69 humidity 70.0 90 < th dose independent rect. 15 16
984 18.70 temperature 10.0 270 > th dose dependent rect. 6 6
987 18.71 humidity 90.0 270 < th dose independent rect. 12 6