Os05g0302100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os05g0302100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 268.64 | 0.77 | 3.5 | 0.85 | 0.458 | 0.468 | 1.02 | 2.03 | 0.0705 | 23.1 | 1015 | 4162 | -- | -- |
| 277.52 | 0.776 | 3.48 | 1.17 | 0.471 | 0.471 | 1.02 | -- | 0.153 | 22.8 | 1014 | 5018 | -- | -- |
| 272.8 | 0.769 | 3.5 | 0.809 | 0.46 | 0.479 | -- | 2.01 | 0.0707 | 22.5 | 1015 | 4235 | -- | -- |
| 281.84 | 0.782 | 3.48 | 1.13 | 0.47 | 0.473 | -- | -- | 0.151 | 22.5 | 1014 | 5018 | -- | -- |
| 285.61 | 0.787 | 3.5 | 0.821 | -- | 0.543 | -- | 2.09 | 0.0775 | -- | 1015 | 4406 | -- | -- |
| 285.72 | 0.792 | 3.5 | 1.12 | 0.473 | -- | 1.04 | -- | 0.0756 | 22.8 | -- | -- | -- | -- |
| 290.16 | 0.798 | 3.5 | 1.08 | 0.473 | -- | -- | -- | 0.0735 | 22.4 | -- | -- | -- | -- |
| 295.37 | 0.8 | 3.47 | 1.13 | -- | 0.484 | -- | -- | 0.158 | -- | 1014 | 5018 | -- | -- |
| 313.66 | 0.825 | 3.51 | -- | 0.508 | 0.525 | -- | -- | 0.0248 | 22.6 | 1014 | 4241 | -- | -- |
| 303.82 | 0.814 | 3.49 | 1.09 | -- | -- | -- | -- | 0.0752 | -- | -- | -- | -- | -- |
| 320.75 | 0.838 | 3.53 | -- | 0.479 | -- | -- | -- | -0.0465 | 22.6 | -- | -- | -- | -- |
| 327.59 | 0.843 | 3.5 | -- | -- | 0.499 | -- | -- | 0.0168 | -- | 1014 | 4266 | -- | -- |
| 334.88 | 0.854 | 3.51 | -- | -- | -- | -- | -- | -0.0452 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 267.34 | wind | 1.0 | 720 | < th | dose dependent | rect. | 8 | 5 |
| 2 | 267.98 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 24 | 10 |
| 3 | 267.99 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 4 | 268.01 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 7 | 268.02 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 7 | 3 |
| 9 | 268.03 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 13 | 268.06 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 19 | 268.09 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 24 | 14 |
| 21 | 268.10 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 26 | 268.11 | atmosphere | 1015.0 | 4320 | > th | dose dependent | sin | 5 | NA |
| 31 | 268.12 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 32 | 268.12 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 48 | 268.17 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 3 | 7 |
| 162 | 268.37 | atmosphere | 1015.0 | 4320 | > th | dose independent | sin | 5 | NA |
| 180 | 268.39 | atmosphere | 1015.0 | 4320 | < th | dose independent | sin | 5 | NA |
| 587 | 268.73 | wind | 1.0 | 720 | < th | dose independent | rect. | 8 | 5 |
| 653 | 268.76 | atmosphere | 1015.0 | 4320 | > th | dose dependent | no | NA | NA |
| 678 | 268.78 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 12 | 22 |
| 679 | 268.78 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 11 | 23 |
| 689 | 268.79 | atmosphere | 1015.0 | 4320 | > th | dose independent | no | NA | NA |
| 690 | 268.79 | atmosphere | 1015.0 | 4320 | < th | dose independent | no | NA | NA |
| 769 | 268.85 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 7 | 23 |
| 811 | 268.91 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 22 | 2 |
| 816 | 268.91 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 22 | 2 |