Os05g0299600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1677, Oryza sativa family protein.
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Os05g0299600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1677, Oryza sativa family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.65 | 0.238 | 10.9 | 0.942 | 1.42 | 0.691 | 0.142 | -1.32 | 0.216 | 5.27 | 30.73 | 256 | -- | -- |
| 27.15 | 0.243 | 10.9 | 0.745 | 1.39 | 0.888 | -0.255 | -- | 0.145 | 5.48 | 68.9 | 111 | -- | -- |
| 25.69 | 0.236 | 10.9 | 0.932 | 1.42 | 0.707 | -- | -1.27 | 0.213 | 5.28 | 31.08 | 253 | -- | -- |
| 27.15 | 0.243 | 10.9 | 0.7 | 1.43 | 0.792 | -- | -- | 0.136 | 5.49 | 68.1 | 60 | -- | -- |
| 100.41 | 0.467 | 10.9 | 1.22 | -- | 2.19 | -- | -1.29 | 0.402 | -- | 34.9 | 271 | -- | -- |
| 33.34 | 0.271 | 10.9 | 0.546 | 1.62 | -- | -0.141 | -- | 0.0264 | 5.16 | -- | -- | -- | -- |
| 33.39 | 0.271 | 10.9 | 0.547 | 1.62 | -- | -- | -- | 0.0271 | 5.16 | -- | -- | -- | -- |
| 101.58 | 0.469 | 10.9 | 1.04 | -- | 2.15 | -- | -- | 0.358 | -- | 52.76 | 269 | -- | -- |
| 39.08 | 0.293 | 10.9 | -- | 1.54 | 0.454 | -- | -- | 0.0202 | 5.37 | 81.42 | 87 | -- | -- |
| 170.9 | 0.611 | 10.9 | 0.604 | -- | -- | -- | -- | 0.068 | -- | -- | -- | -- | -- |
| 41.27 | 0.301 | 10.9 | -- | 1.63 | -- | -- | -- | -0.0338 | 5.15 | -- | -- | -- | -- |
| 128.3 | 0.528 | 10.9 | -- | -- | 1.8 | -- | -- | 0.203 | -- | 95.5 | 268 | -- | -- |
| 180.52 | 0.627 | 11 | -- | -- | -- | -- | -- | 0.00102 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.32 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 20 |
| 3 | 24.48 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 19 |
| 5 | 24.51 | temperature | 15 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 20 | 24.63 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 25 | 24.85 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 32 | 24.93 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 52 | 25.22 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 14 |
| 54 | 25.23 | temperature | 15 | 90 | > th | dose dependent | rect. | 13 | 14 |
| 56 | 25.26 | temperature | 15 | 10 | > th | dose dependent | rect. | 13 | 14 |
| 69 | 25.43 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 103 | 25.68 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 111 | 25.73 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 117 | 25.75 | temperature | 20 | 90 | > th | dose independent | rect. | 13 | 14 |
| 119 | 25.77 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 162 | 25.88 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 172 | 25.92 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 212 | 26.02 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 19 |
| 213 | 26.02 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 11 |
| 219 | 26.03 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 232 | 26.06 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 18 |
| 241 | 26.09 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 19 |
| 271 | 26.15 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 319 | 26.23 | temperature | 25 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 320 | 26.23 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 329 | 26.24 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 342 | 26.26 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 345 | 26.27 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 19 |
| 365 | 26.29 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 438 | 26.41 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 516 | 26.53 | temperature | 20 | 90 | > th | dose independent | rect. | 11 | 23 |
| 602 | 26.69 | temperature | 15 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 655 | 26.82 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 21 |
| 708 | 26.90 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 13 |
| 758 | 26.96 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 15 |
| 832 | 27.04 | temperature | 20 | 10 | < th | dose independent | rect. | 15 | 22 |
| 943 | 27.16 | temperature | 20 | 10 | > th | dose independent | rect. | 13 | 21 |
| 951 | 27.17 | temperature | 20 | 90 | < th | dose independent | rect. | 9 | 21 |
| 954 | 27.17 | temperature | 25 | 270 | < th | dose dependent | sin | 10 | NA |
| 961 | 27.18 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 10 |