Os05g0299300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD40-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
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Os05g0299300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WD40-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.73 | 0.243 | 9.15 | -0.717 | 0.163 | 0.213 | 0.025 | 0.897 | 0.00999 | 5.63 | 29.72 | 2559 | -- | -- |
| 26.68 | 0.241 | 9.12 | -0.527 | 0.111 | 0.356 | -0.0509 | -- | 0.0621 | 6.14 | 29.5 | 1800 | -- | -- |
| 26.73 | 0.241 | 9.15 | -0.717 | 0.162 | 0.213 | -- | 0.901 | 0.00993 | 5.64 | 29.72 | 2553 | -- | -- |
| 26.67 | 0.241 | 9.12 | -0.527 | 0.118 | 0.347 | -- | -- | 0.0609 | 6.47 | 29.5 | 1762 | -- | -- |
| 27.2 | 0.243 | 9.12 | -0.571 | -- | 0.342 | -- | 0.254 | 0.0846 | -- | 29.1 | 1848 | -- | -- |
| 30.93 | 0.261 | 9.12 | -0.62 | 0.155 | -- | -0.0043 | -- | 0.0584 | 6.6 | -- | -- | -- | -- |
| 30.93 | 0.26 | 9.12 | -0.62 | 0.154 | -- | -- | -- | 0.0584 | 6.6 | -- | -- | -- | -- |
| 27.25 | 0.243 | 9.11 | -0.517 | -- | 0.361 | -- | -- | 0.0958 | -- | 29.3 | 1855 | -- | -- |
| 33.55 | 0.27 | 9.11 | -- | 0.104 | 0.448 | -- | -- | 0.117 | 6.66 | 29.56 | 1748 | -- | -- |
| 32.17 | 0.265 | 9.12 | -0.616 | -- | -- | -- | -- | 0.0616 | -- | -- | -- | -- | -- |
| 41.06 | 0.3 | 9.1 | -- | 0.147 | -- | -- | -- | 0.127 | 6.84 | -- | -- | -- | -- |
| 33.8 | 0.271 | 9.09 | -- | -- | 0.474 | -- | -- | 0.185 | -- | 29 | 1830 | -- | -- |
| 42.19 | 0.303 | 9.1 | -- | -- | -- | -- | -- | 0.13 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.03 | humidity | 70 | 270 | > th | dose independent | rect. | 15 | 10 |
| 2 | 25.07 | humidity | 70 | 270 | > th | dose independent | sin | 16 | NA |
| 6 | 25.17 | humidity | 90 | 270 | < th | dose dependent | rect. | 11 | 9 |
| 8 | 25.21 | humidity | 70 | 270 | < th | dose independent | sin | 16 | NA |
| 18 | 25.41 | humidity | 70 | 270 | < th | dose independent | rect. | 12 | 8 |
| 84 | 25.62 | humidity | 50 | 270 | > th | dose dependent | rect. | 7 | 16 |
| 94 | 25.68 | humidity | 70 | 270 | > th | dose independent | rect. | 7 | 16 |
| 126 | 25.78 | humidity | 80 | 270 | < th | dose dependent | sin | 18 | NA |
| 130 | 25.79 | humidity | 70 | 270 | > th | dose independent | rect. | 6 | 20 |
| 207 | 26.07 | humidity | 90 | 90 | < th | dose dependent | rect. | 15 | 5 |
| 223 | 26.13 | humidity | 70 | 270 | < th | dose independent | rect. | 15 | 2 |
| 241 | 26.14 | humidity | 60 | 270 | > th | dose dependent | rect. | 15 | 8 |
| 242 | 26.14 | humidity | 50 | 270 | > th | dose dependent | rect. | 15 | 10 |
| 259 | 26.19 | humidity | 50 | 270 | > th | dose dependent | sin | 19 | NA |
| 297 | 26.25 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 9 |
| 303 | 26.26 | radiation | 10 | 270 | < th | dose dependent | sin | 16 | NA |
| 307 | 26.26 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 17 |
| 309 | 26.26 | radiation | 10 | 270 | < th | dose dependent | rect. | 6 | 20 |
| 314 | 26.28 | radiation | 1 | 270 | > th | dose independent | sin | 18 | NA |
| 340 | 26.29 | radiation | 10 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 346 | 26.31 | radiation | 1 | 270 | < th | dose independent | sin | 18 | NA |
| 377 | 26.36 | radiation | 20 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 378 | 26.36 | humidity | 90 | 270 | < th | dose dependent | rect. | 15 | 1 |
| 384 | 26.37 | radiation | 1 | 270 | > th | dose independent | rect. | 11 | 19 |
| 394 | 26.38 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 20 |
| 396 | 26.39 | radiation | 1 | 270 | < th | dose independent | rect. | 5 | 21 |
| 408 | 26.41 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 17 |
| 417 | 26.42 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 18 |
| 419 | 26.42 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 22 |
| 423 | 26.43 | radiation | 10 | 270 | < th | dose dependent | rect. | 15 | 11 |
| 435 | 26.44 | temperature | 10 | 30 | > th | dose dependent | rect. | 15 | 18 |
| 465 | 26.48 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 519 | 26.55 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 524 | 26.56 | radiation | 1 | 270 | > th | dose independent | rect. | 11 | 8 |
| 546 | 26.57 | radiation | 1 | 270 | < th | dose independent | rect. | 6 | 19 |
| 551 | 26.58 | radiation | 1 | 270 | < th | dose independent | rect. | 9 | 16 |
| 598 | 26.64 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 3 |
| 603 | 26.64 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 8 |
| 610 | 26.65 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 611 | 26.65 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 3 |
| 625 | 26.66 | humidity | 90 | 10 | < th | dose dependent | rect. | 15 | 18 |
| 628 | 26.67 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 645 | 26.68 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 10 |
| 647 | 26.68 | radiation | 10 | 270 | < th | dose independent | rect. | 15 | 10 |
| 657 | 26.68 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 21 |
| 768 | 26.72 | temperature | 10 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 797 | 26.74 | temperature | 30 | 1440 | < th | dose independent | sin | 17 | NA |
| 855 | 26.75 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 18 |
| 982 | 26.78 | temperature | 30 | 1440 | > th | dose independent | sin | 17 | NA |
| 999 | 26.78 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 18 |