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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0299100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0166) R2 : 0.0249
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.119 (0.0349) R2dN8 : 0.0321 R2N8 : 0.0249
σ : 0.312
deviance : 44.71
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
42.46 0.306 3.06 -0.175 0.0414 0.111 0.0293 -0.264 0.0206 3.82 1007 112 -- --
42.82 0.305 3.06 -0.178 0.0395 0.108 0.0412 -- 0.0319 3.66 1007 215 -- --
42.46 0.303 3.06 -0.175 0.0418 0.111 -- -0.265 0.0204 3.87 1007 111 -- --
42.83 0.305 3.06 -0.178 0.0399 0.108 -- -- 0.0317 3.75 1007 215 -- --
42.55 0.304 3.06 -0.174 -- 0.109 -- -0.259 0.0223 -- 1007 111 -- --
43.72 0.31 3.05 -0.187 0.0339 -- 0.0542 -- 0.0977 4.46 -- -- -- --
43.73 0.31 3.05 -0.187 0.0349 -- -- -- 0.0974 5.01 -- -- -- --
42.92 0.305 3.06 -0.178 -- 0.106 -- -- 0.0334 -- 1007 215 -- --
43.68 0.308 3.06 -- 0.0366 0.112 -- -- 0.0487 3.77 1007 215 -- --
43.79 0.309 3.05 -0.186 -- -- -- -- 0.0983 -- -- -- -- --
44.65 0.313 3.04 -- 0.0317 -- -- -- 0.118 5.2 -- -- -- --
43.75 0.308 3.06 -- -- 0.11 -- -- 0.0506 -- 1007 215 -- --
44.71 0.312 3.04 -- -- -- -- -- 0.119 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 39.72 humidity 70.0 30 < th dose dependent rect. 10 1
2 39.89 humidity 70.0 30 < th dose independent rect. 10 1
4 39.94 wind 1.0 30 < th dose independent rect. 10 1
5 39.94 temperature 10.0 1440 > th dose independent rect. 11 1
9 39.94 atmosphere 995.0 1440 > th dose independent rect. 11 1
12 39.94 precipitation 0.1 1440 < th dose independent rect. 11 1
13 39.94 temperature 10.0 1440 > th dose independent rect. 12 23
16 39.94 wind 1.0 30 < th dose dependent rect. 10 1
17 39.94 precipitation 0.1 1440 < th dose dependent rect. 11 1
18 40.02 temperature 25.0 30 > th dose dependent rect. 10 1
20 40.08 atmosphere 1010.0 30 < th dose independent rect. 10 1
22 40.12 temperature 25.0 30 > th dose independent rect. 10 1
23 40.12 radiation 20.0 30 > th dose independent rect. 10 1
26 40.20 atmosphere 1005.0 30 > th dose independent rect. 10 1
28 40.23 radiation 10.0 30 > th dose dependent rect. 10 1
33 40.26 atmosphere 1000.0 30 > th dose dependent rect. 10 1
38 40.30 wind 9.0 30 < th dose independent rect. 11 23
40 40.33 wind 5.0 30 < th dose dependent rect. 10 1
47 40.35 temperature 10.0 30 > th dose independent rect. 10 1
49 40.35 temperature 30.0 30 < th dose independent rect. 10 1
50 40.35 humidity 50.0 30 > th dose independent rect. 10 1
55 40.35 precipitation 0.1 30 < th dose independent rect. 10 1
56 40.35 temperature 10.0 30 > th dose independent rect. 11 23
57 40.35 precipitation 0.1 30 < th dose dependent rect. 10 1
59 40.37 wind 1.0 30 > th dose independent rect. 10 1
62 40.46 radiation 40.0 30 < th dose independent rect. 10 1
66 40.65 atmosphere 1015.0 30 < th dose dependent rect. 10 1
69 40.76 wind 1.0 30 > th dose dependent rect. 10 1
70 40.80 radiation 40.0 30 < th dose dependent rect. 10 1
76 40.98 humidity 50.0 30 > th dose dependent rect. 10 1
115 42.03 wind 1.0 10 < th dose dependent rect. 3 9
117 42.04 wind 1.0 10 < th dose independent rect. 3 9
119 42.04 wind 1.0 10 < th dose dependent rect. 3 7
121 42.05 wind 1.0 10 < th dose independent rect. 3 7
134 42.23 atmosphere 995.0 30 > th dose independent rect. 11 23
135 42.24 humidity 80.0 720 < th dose dependent rect. 19 3
137 42.27 temperature 20.0 270 > th dose dependent rect. 21 10
138 42.27 temperature 30.0 90 < th dose dependent rect. 19 11
143 42.30 humidity 90.0 14400 > th dose independent rect. 2 5
147 42.30 temperature 30.0 10 < th dose dependent rect. 20 10
151 42.31 temperature 20.0 720 > th dose dependent rect. 22 1
156 42.32 radiation 1.0 720 > th dose dependent rect. 18 11
157 42.32 wind 1.0 10 < th dose dependent rect. 3 20
160 42.34 temperature 20.0 90 > th dose dependent rect. 16 17
165 42.36 temperature 10.0 30 > th dose dependent rect. 11 23
166 42.37 temperature 25.0 720 < th dose independent rect. 18 4
167 42.37 temperature 20.0 90 > th dose dependent sin 11 NA
176 42.38 precipitation 0.1 30 < th dose independent rect. 11 23
177 42.38 precipitation 0.1 30 < th dose dependent rect. 11 23
178 42.39 temperature 30.0 30 < th dose dependent rect. 14 16
184 42.41 humidity 80.0 720 < th dose dependent rect. 19 12
189 42.42 radiation 1.0 1440 < th dose dependent rect. 21 8
193 42.43 wind 1.0 10 < th dose independent rect. 3 4
195 42.43 radiation 1.0 720 > th dose dependent rect. 18 1
229 42.46 wind 1.0 10 < th dose dependent rect. 3 4
231 42.46 radiation 1.0 1440 < th dose dependent rect. 24 5
232 42.46 temperature 25.0 90 < th dose dependent rect. 23 7
250 42.47 humidity 80.0 720 < th dose dependent rect. 18 14
258 42.48 radiation 1.0 1440 < th dose dependent rect. 2 3
264 42.49 temperature 25.0 720 > th dose independent rect. 21 3
269 42.49 temperature 25.0 90 < th dose dependent sin 9 NA
276 42.50 humidity 90.0 14400 > th dose independent rect. 4 2
278 42.50 humidity 90.0 14400 < th dose independent rect. 2 5
300 42.52 wind 1.0 30 < th dose independent rect. 4 1
319 42.54 temperature 10.0 90 > th dose dependent sin 10 NA
328 42.55 temperature 25.0 720 > th dose independent rect. 18 6
330 42.55 temperature 25.0 720 < th dose independent rect. 18 11
334 42.55 wind 1.0 30 < th dose dependent rect. 4 1
371 42.57 wind 1.0 10 < th dose independent rect. 3 20
382 42.58 humidity 80.0 1440 > th dose independent rect. 1 1
388 42.58 temperature 25.0 720 > th dose dependent rect. 17 8
401 42.59 humidity 70.0 10 < th dose independent rect. 14 21
411 42.60 humidity 80.0 720 < th dose independent rect. 1 1
419 42.60 temperature 25.0 10 < th dose dependent sin 8 NA
421 42.60 humidity 80.0 720 < th dose dependent rect. 1 1
434 42.60 temperature 20.0 10 > th dose dependent rect. 18 15
446 42.61 temperature 10.0 10 > th dose dependent sin 10 NA
495 42.63 wind 9.0 720 > th dose independent rect. 18 8
546 42.64 radiation 1.0 720 < th dose dependent rect. 17 9
562 42.65 precipitation 0.1 10 > th dose independent rect. 3 1
569 42.65 wind 9.0 720 > th dose independent rect. 18 5
577 42.65 radiation 40.0 720 < th dose independent rect. 14 9
586 42.65 precipitation 0.1 10 > th dose dependent rect. 3 1
605 42.66 wind 9.0 720 > th dose independent rect. 18 1
611 42.66 humidity 80.0 720 < th dose independent rect. 18 4
614 42.66 atmosphere 1005.0 90 > th dose independent rect. 9 7
644 42.67 atmosphere 1005.0 30 > th dose independent rect. 14 2
653 42.67 wind 9.0 1440 > th dose dependent rect. 18 1
671 42.67 temperature 25.0 10 < th dose dependent rect. 12 19
673 42.68 radiation 1.0 90 > th dose independent rect. 4 1
694 42.68 radiation 1.0 90 > th dose dependent rect. 4 1
715 42.68 temperature 20.0 10 > th dose dependent rect. 18 13
756 42.70 atmosphere 1005.0 10 > th dose independent rect. 10 6
770 42.70 humidity 50.0 720 > th dose dependent rect. 19 7
804 42.71 wind 1.0 30 < th dose dependent rect. 6 1
833 42.72 temperature 25.0 1440 < th dose independent rect. 23 1
846 42.72 atmosphere 1005.0 30 > th dose independent rect. 20 20
893 42.73 humidity 70.0 30 < th dose independent rect. 12 23
894 42.73 wind 1.0 10 < th dose dependent sin 1 NA
898 42.73 humidity 90.0 720 > th dose dependent rect. 20 3
910 42.73 wind 9.0 720 > th dose dependent rect. 18 8
919 42.73 temperature 10.0 10 > th dose dependent rect. 16 11
937 42.74 humidity 80.0 720 < th dose independent rect. 23 4
960 42.74 wind 9.0 720 > th dose dependent rect. 18 5
968 42.74 humidity 50.0 720 > th dose dependent rect. 17 8
982 42.75 humidity 90.0 14400 > th dose independent sin 9 NA
983 42.75 humidity 90.0 270 > th dose independent rect. 23 1