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Os05g0297800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.89 (0.0328) R2 : 0.831
β1 : 1.02 (0.12) R2dD : 0.0283 R2D : -0.00257
β2 : 5.32 (0.116) R2dC : 1.77 R2C : -0.595
β3 : -5.07 (0.123) R2dE : 1.41 R2E : -0.959
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.256 (0.07) R2dN8 : 0.00756 R2N8 : -0.0146
σ : 0.609
deviance : 171.21
__
_____
C
peak time of C : 12.3
E
wheather : temperature
threshold : 2.269
memory length : 311
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.13
open length of G : 9.11

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
173.81 0.619 6.9 1.15 4.47 -4.35 -0.999 0.578 0.305 12.6 8.708 268 2.14 9.13
170.51 0.608 6.9 1.06 5.07 -4.7 -0.749 -- 0.263 12.3 2.018 286 2.17 9.22
174.56 0.615 6.9 1.02 4.69 -4.43 -- -0.337 0.318 12.6 7.621 284 2.17 9.18
171.21 0.609 6.89 1.02 5.32 -5.07 -- -- 0.256 12.3 2.269 311 2.13 9.11
617.19 1.16 6.96 0.99 -- -3.37 -- 0.255 0.485 -- 11.22 21 0.0167 10.8
299.55 0.811 7.07 0.771 3.61 -- -1.03 -- 0.0271 16.3 -- -- -- --
302.48 0.814 7.08 0.761 3.6 -- -- -- 0.0214 16.3 -- -- -- --
608 1.15 6.94 0.98 -- -2.94 -- -- 0.447 -- 10.83 20 0.0166 10.8
197.37 0.654 6.93 -- 5.31 -4.97 -- -- 0.142 12.2 -2.439 314 2.12 9.12
1002.97 1.48 7.05 0.617 -- -- -- -- -0.0742 -- -- -- -- --
317.75 0.834 7.09 -- 3.59 -- -- -- -0.0633 16.3 -- -- -- --
621.84 1.16 7 -- -- -2.62 -- -- 0.22 -- 4.588 19 0.0131 10.8
1013.03 1.49 7.07 -- -- -- -- -- -0.143 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 178.69 temperature 10.0 270 > th dose dependent rect. 2 9
4 189.01 temperature 10.0 270 > th dose dependent rect. 17 18
17 197.98 wind 1.0 270 > th dose independent rect. 11 5
19 198.72 radiation 10.0 43200 < th dose dependent rect. 19 7
20 198.80 wind 1.0 270 > th dose independent rect. 10 7
22 199.18 wind 1.0 270 > th dose dependent rect. 11 5
27 200.25 precipitation 0.1 270 < th dose independent rect. 16 19
28 200.25 precipitation 0.1 270 < th dose dependent rect. 16 19
30 200.33 temperature 15.0 10 > th dose dependent rect. 4 9
31 200.87 wind 9.0 270 < th dose independent rect. 16 19
34 201.00 precipitation 0.1 270 < th dose independent rect. 17 17
35 201.00 precipitation 0.1 270 < th dose dependent rect. 17 17
37 201.37 radiation 1.0 270 < th dose dependent rect. 21 18
40 201.69 wind 9.0 270 < th dose independent rect. 16 6
41 201.72 radiation 1.0 270 < th dose independent rect. 21 17
43 202.45 wind 9.0 270 < th dose independent rect. 17 17
44 202.55 wind 1.0 270 > th dose independent rect. 16 6
50 203.10 atmosphere 995.0 270 > th dose independent rect. 11 5
51 203.28 precipitation 0.1 270 < th dose independent rect. 16 6
52 203.28 precipitation 0.1 270 < th dose dependent rect. 16 6
55 203.36 temperature 10.0 270 > th dose independent rect. 11 5
56 203.36 atmosphere 1015.0 270 < th dose independent rect. 11 5
57 203.36 temperature 10.0 270 > th dose independent rect. 16 19
58 203.48 temperature 10.0 270 > th dose independent rect. 10 7
59 203.48 atmosphere 1015.0 270 < th dose independent rect. 10 7
60 203.48 temperature 10.0 270 > th dose independent rect. 17 17
61 203.49 precipitation 0.1 270 < th dose independent rect. 11 5
62 203.49 precipitation 0.1 270 < th dose dependent rect. 11 5
63 203.52 temperature 10.0 270 > th dose independent rect. 16 6
64 203.52 radiation 40.0 270 < th dose independent rect. 16 6
65 203.52 temperature 10.0 270 > th dose independent rect. 22 18
66 203.63 atmosphere 995.0 270 > th dose independent rect. 22 18
69 203.95 precipitation 0.1 270 < th dose independent rect. 10 7
70 203.95 precipitation 0.1 270 < th dose dependent rect. 10 7
74 204.26 atmosphere 995.0 270 > th dose independent rect. 10 7
78 204.36 wind 9.0 270 < th dose independent rect. 6 15
85 205.01 humidity 50.0 270 > th dose independent rect. 17 17
93 205.76 radiation 40.0 270 < th dose dependent rect. 16 6
103 206.37 wind 1.0 270 > th dose independent rect. 23 17
114 206.78 wind 9.0 270 < th dose independent rect. 15 22
117 206.95 atmosphere 1015.0 270 < th dose independent rect. 22 18
121 207.17 radiation 20.0 270 < th dose dependent rect. 21 10
124 207.32 precipitation 0.1 270 < th dose independent rect. 22 18
125 207.32 precipitation 0.1 270 < th dose dependent rect. 22 18
131 207.73 wind 1.0 270 > th dose independent rect. 12 3
133 207.77 atmosphere 995.0 270 > th dose independent rect. 17 17
151 208.57 temperature 20.0 270 > th dose independent rect. 3 8
154 208.63 wind 9.0 270 < th dose independent rect. 11 5
165 209.16 wind 9.0 270 < th dose independent rect. 17 4
170 209.37 precipitation 0.1 270 < th dose independent rect. 17 4
171 209.37 precipitation 0.1 270 < th dose dependent rect. 17 4
175 209.45 atmosphere 995.0 270 > th dose independent rect. 16 19
176 209.50 wind 1.0 270 > th dose independent rect. 17 4
180 209.88 humidity 50.0 270 > th dose independent rect. 11 5
181 209.91 precipitation 0.1 270 < th dose independent rect. 6 15
182 209.91 precipitation 0.1 270 < th dose dependent rect. 6 15
183 209.98 atmosphere 995.0 270 > th dose independent rect. 16 6
184 210.02 atmosphere 1015.0 270 < th dose independent rect. 16 6
187 210.09 temperature 10.0 270 > th dose independent rect. 17 4
188 210.09 radiation 20.0 270 < th dose independent rect. 17 4
191 210.09 wind 9.0 270 < th dose independent rect. 22 18
192 210.09 temperature 10.0 270 > th dose independent rect. 21 20
194 210.12 humidity 50.0 270 > th dose independent rect. 16 19
196 210.17 temperature 20.0 270 > th dose independent rect. 12 3
197 210.26 precipitation 0.1 270 < th dose independent rect. 15 21
198 210.26 precipitation 0.1 270 < th dose dependent rect. 15 21
215 210.62 atmosphere 995.0 270 > th dose dependent rect. 11 5
217 210.71 radiation 1.0 270 < th dose independent rect. 21 10
219 210.80 radiation 40.0 270 < th dose dependent rect. 17 4
229 211.10 temperature 10.0 270 > th dose independent rect. 21 9
230 211.10 temperature 30.0 270 < th dose independent rect. 21 9
231 211.10 humidity 50.0 270 > th dose independent rect. 21 9
234 211.10 atmosphere 995.0 270 > th dose independent rect. 21 9
235 211.10 radiation 20.0 270 < th dose independent rect. 21 9
238 211.10 temperature 10.0 270 > th dose independent rect. 6 15
239 211.16 wind 9.0 270 < th dose independent rect. 21 9
255 211.42 humidity 50.0 270 > th dose independent rect. 17 4
257 211.43 atmosphere 995.0 270 > th dose independent rect. 21 20
273 211.91 wind 9.0 270 < th dose independent rect. 10 7
277 212.02 humidity 50.0 270 > th dose independent rect. 22 18
287 212.13 radiation 1.0 270 > th dose independent rect. 11 5
288 212.21 humidity 50.0 270 > th dose independent rect. 16 6
292 212.29 radiation 40.0 270 < th dose independent rect. 17 17
299 212.61 atmosphere 1015.0 270 < th dose independent rect. 17 4
315 213.01 atmosphere 995.0 270 > th dose independent rect. 12 3
353 213.63 atmosphere 1015.0 270 < th dose independent rect. 6 15
361 213.77 wind 7.0 270 < th dose independent rect. 3 9
367 213.89 temperature 30.0 10 < th dose dependent rect. 24 18
375 214.10 atmosphere 995.0 270 > th dose independent rect. 17 4
385 214.35 precipitation 0.1 270 < th dose independent rect. 21 20
386 214.35 precipitation 0.1 270 < th dose dependent rect. 21 20
387 214.38 humidity 50.0 270 > th dose independent rect. 10 7
404 214.93 precipitation 0.1 270 < th dose independent rect. 3 9
405 214.93 precipitation 0.1 270 < th dose dependent rect. 3 9
417 215.26 wind 9.0 270 < th dose independent rect. 13 2
421 215.31 precipitation 0.1 270 < th dose independent rect. 21 9
422 215.31 precipitation 0.1 270 < th dose dependent rect. 21 9
461 216.24 humidity 90.0 270 < th dose independent rect. 11 5
487 216.77 wind 9.0 270 < th dose dependent rect. 17 4
510 217.21 atmosphere 995.0 270 > th dose dependent rect. 12 3
519 217.49 humidity 90.0 270 < th dose independent rect. 12 3
525 217.61 radiation 40.0 270 < th dose independent rect. 16 19
539 217.84 atmosphere 995.0 270 > th dose independent rect. 3 9
540 217.84 atmosphere 1015.0 270 < th dose independent rect. 3 9
541 217.84 temperature 10.0 270 > th dose independent rect. 12 15
552 218.09 wind 9.0 270 < th dose dependent rect. 16 6
581 218.57 humidity 50.0 270 > th dose independent rect. 3 9
583 218.62 radiation 1.0 10 < th dose dependent rect. 17 7
597 218.71 wind 9.0 270 < th dose independent rect. 21 20
608 218.82 atmosphere 995.0 90 > th dose dependent rect. 13 5
615 218.95 radiation 1.0 270 > th dose independent rect. 17 18
622 219.06 humidity 60.0 10 > th dose independent rect. 18 6
627 219.16 radiation 40.0 10 < th dose independent rect. 12 6
655 219.57 precipitation 0.1 10 < th dose independent rect. 18 19
658 219.57 precipitation 0.1 10 < th dose dependent rect. 18 19
667 219.66 humidity 50.0 10 > th dose independent rect. 18 19
697 219.98 radiation 1.0 270 > th dose independent rect. 13 2
723 220.14 radiation 1.0 10 < th dose independent rect. 18 6
726 220.16 radiation 20.0 10 < th dose dependent rect. 18 6
734 220.25 temperature 10.0 10 > th dose independent rect. 18 6
736 220.25 radiation 20.0 10 < th dose independent rect. 18 6
740 220.25 temperature 10.0 10 > th dose independent rect. 24 18
752 220.35 atmosphere 995.0 10 > th dose independent rect. 18 6
766 220.54 atmosphere 1015.0 10 < th dose independent rect. 24 18
823 221.13 wind 9.0 10 < th dose independent rect. 18 6
828 221.17 precipitation 0.1 10 < th dose independent rect. 18 6
829 221.17 precipitation 0.1 10 < th dose dependent rect. 18 6
845 221.42 temperature 10.0 270 > th dose dependent rect. 17 5
848 221.45 atmosphere 995.0 10 > th dose independent rect. 24 18
909 222.35 atmosphere 995.0 270 > th dose independent rect. 12 15
930 222.60 temperature 10.0 1440 > th dose independent rect. 14 5
934 222.60 temperature 10.0 1440 > th dose independent rect. 19 19
937 222.60 atmosphere 995.0 1440 > th dose independent rect. 19 19
971 222.81 atmosphere 1015.0 270 < th dose independent rect. 16 19