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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0297000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.2 (0.12) R2 : 0.413
β1 : 0.956 (0.385) R2dD : 0.0302 R2D : -0.4
β2 : -- (--) R2dC : -- R2C : --
β3 : 16.3 (2.31) R2dE : 4.34 R2E : -2.24
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 28.7 (5.23) R2dD*E : 2.42 R2D*E : -3.78
γ1 : -0.571 (0.127) R2dN8 : 0.0386 R2N8 : -0.124
σ : 1.06
deviance : 515.54
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.4039
memory length : 3571
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.02
open length of G : 0.753

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
523.35 1.07 4.37 1.44 0.284 15 -3.26 28.1 -0.567 13.8 1.015 4067 8.03 0.883
653.5 1.2 3.71 -1.96 0.305 1.88 -3.51 -- -1.02 14.5 0.0004596 17 11 2.77
530.1 1.07 4.28 0.891 0.186 15.3 -- 28.3 -0.566 12.1 0.7514 3647 8.03 0.839
694.41 1.23 3.71 -1.97 0.307 2.48 -- -- -1.02 14 0.001996 17 11 2.76
515.54 1.06 4.2 0.956 -- 16.3 -- 28.7 -0.571 -- 0.4039 3571 8.02 0.753
656.97 1.2 3.71 -1.99 0.318 -- -3.56 -- -1.03 14.5 -- -- -- --
701.94 1.24 3.72 -2.08 0.32 -- -- -- -1.05 13.1 -- -- -- --
699.39 1.23 3.71 -1.99 -- 2.9 -- -- -1.02 -- 0.05962 17 11 2.76
802.28 1.32 3.69 -- 0.287 3.72 -- -- -0.823 13.8 1.388 16 11 2.75
708.29 1.24 3.72 -2.09 -- -- -- -- -1.05 -- -- -- -- --
816.24 1.34 3.67 -- 0.355 -- -- -- -0.816 13.3 -- -- -- --
806.97 1.32 3.69 -- -- 3.66 -- -- -0.818 -- 1.309 19 10.8 2.97
824.02 1.34 3.67 -- -- -- -- -- -0.822 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 530.98 radiation 30 1440 < th dose independent rect. 16 6
2 531.16 radiation 30 1440 < th dose independent rect. 16 9
3 531.44 radiation 30 1440 < th dose independent rect. 16 2
5 531.94 radiation 30 1440 < th dose independent rect. 16 11
7 532.03 radiation 30 1440 < th dose independent rect. 16 13
17 538.91 radiation 10 720 < th dose independent rect. 14 19
18 539.77 radiation 10 720 < th dose independent rect. 15 17
20 540.38 radiation 10 720 < th dose independent sin 12 NA
22 540.81 radiation 1 4320 < th dose independent rect. 8 1
23 540.81 radiation 1 4320 < th dose dependent rect. 8 1
29 543.91 radiation 10 720 < th dose independent rect. 5 19
31 544.74 radiation 10 720 < th dose independent rect. 3 21
36 546.77 radiation 10 720 < th dose independent rect. 5 14
37 546.83 radiation 30 1440 < th dose independent rect. 11 1
38 546.95 humidity 60 43200 < th dose dependent rect. 19 5
41 547.12 radiation 10 720 < th dose independent rect. 22 10
46 547.86 radiation 10 720 < th dose independent rect. 1 23
49 548.00 radiation 40 1440 < th dose dependent rect. 11 1
63 549.30 radiation 10 720 < th dose independent rect. 3 15
64 549.58 radiation 10 1440 > th dose dependent rect. 11 1
66 549.64 radiation 10 720 < th dose independent rect. 5 10
72 550.12 radiation 40 14400 < th dose independent rect. 19 13
79 550.43 radiation 10 720 < th dose independent rect. 5 3
87 550.63 radiation 40 14400 < th dose independent rect. 7 1
88 550.66 radiation 40 14400 < th dose independent rect. 24 8
89 550.70 radiation 40 14400 < th dose independent rect. 2 6
90 550.76 radiation 40 14400 < th dose independent rect. 4 4
93 550.78 radiation 10 720 < th dose independent rect. 5 23
103 551.14 radiation 10 720 < th dose independent rect. 22 19
109 551.56 radiation 10 720 < th dose independent rect. 22 17
113 551.68 radiation 10 720 < th dose independent sin 5 NA
126 552.45 radiation 30 14400 > th dose dependent rect. 7 1
141 552.46 humidity 50 43200 < th dose independent rect. 20 1
144 552.69 temperature 20 720 < th dose independent rect. 5 1
146 552.71 humidity 90 14400 > th dose dependent rect. 24 1
150 552.88 radiation 10 720 < th dose independent rect. 20 23
160 553.15 radiation 1 4320 > th dose independent rect. 8 1
173 553.48 wind 9 43200 > th dose dependent rect. 22 3
188 553.96 humidity 50 43200 > th dose independent rect. 20 1
192 554.13 humidity 50 43200 < th dose dependent rect. 21 1
198 554.14 radiation 10 720 < th dose independent no NA NA
240 555.85 humidity 90 14400 > th dose dependent rect. 23 3
254 556.18 temperature 20 1440 > th dose independent rect. 21 3
257 556.36 temperature 20 1440 < th dose independent rect. 21 3
273 556.95 humidity 50 43200 > th dose independent rect. 20 5
278 557.07 humidity 50 43200 > th dose independent rect. 20 7
285 557.29 radiation 10 1440 < th dose independent rect. 16 1
286 557.33 radiation 40 1440 < th dose independent rect. 14 23
295 557.54 radiation 1 1440 > th dose dependent rect. 16 21
316 558.05 wind 9 43200 > th dose dependent rect. 22 5
330 558.45 radiation 30 14400 > th dose independent rect. 7 1
348 558.52 wind 1 14400 < th dose dependent rect. 18 1
355 558.61 radiation 10 720 < th dose independent rect. 3 6
376 559.34 humidity 90 14400 < th dose independent rect. 24 1
386 559.48 humidity 90 14400 > th dose dependent rect. 23 8
485 560.17 radiation 40 1440 > th dose dependent rect. 14 21
601 561.27 radiation 10 1440 < th dose independent rect. 16 7
613 561.33 radiation 40 1440 > th dose dependent rect. 14 23
616 561.35 radiation 10 1440 < th dose independent rect. 16 3
617 561.40 radiation 10 1440 < th dose independent rect. 16 11
677 562.24 temperature 20 720 > th dose dependent rect. 4 6
695 562.61 radiation 20 1440 < th dose independent rect. 10 12
700 562.65 wind 7 43200 > th dose independent rect. 7 1
701 562.66 radiation 20 1440 < th dose independent rect. 10 9
712 562.75 radiation 40 1440 < th dose independent rect. 10 23
719 562.88 radiation 1 1440 > th dose dependent rect. 4 9
731 562.90 humidity 90 14400 > th dose dependent rect. 3 4
742 563.03 radiation 40 1440 < th dose independent rect. 6 7
743 563.03 radiation 40 1440 < th dose independent rect. 4 9
749 563.06 radiation 40 1440 < th dose independent rect. 20 17
767 563.24 humidity 80 43200 > th dose dependent rect. 4 8
769 563.29 atmosphere 995 43200 > th dose independent rect. 13 1
770 563.31 temperature 20 1440 > th dose independent rect. 5 1
809 563.66 atmosphere 995 43200 < th dose dependent rect. 11 4
830 563.95 radiation 40 1440 > th dose dependent rect. 8 5
847 563.96 atmosphere 995 43200 < th dose independent rect. 11 3
857 564.12 atmosphere 995 43200 < th dose independent rect. 12 1
861 564.12 atmosphere 995 43200 < th dose dependent rect. 12 1
867 564.19 wind 7 43200 < th dose independent rect. 7 1
871 564.25 radiation 1 4320 < th dose dependent rect. 18 15
872 564.26 humidity 90 43200 < th dose independent rect. 5 2
877 564.34 radiation 1 4320 < th dose dependent rect. 6 3
893 564.64 radiation 30 1440 > th dose independent rect. 11 1
894 564.66 radiation 40 1440 > th dose dependent sin 7 NA
896 564.68 radiation 40 1440 < th dose independent sin 3 NA
941 565.13 radiation 40 1440 < th dose dependent rect. 16 21
945 565.16 radiation 40 1440 < th dose independent rect. 6 16