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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0296900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.83 (0.0365) R2 : 0.316
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.26 (0.087) R2dC : 0.317 R2C : 0.316
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00155 (0.0768) R2dN8 : 7.84e-07 R2N8 : -0.000508
σ : 0.688
deviance : 216.6
__
_____
C
peak time of C : 12.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
187.16 0.643 3.83 -0.141 1.25 -0.545 -0.494 -3.78 -0.0119 12.6 78 4584 -- --
200.07 0.659 3.83 -0.134 1.25 -0.793 -0.41 -- -0.115 12.5 53.81 5547 -- --
188.19 0.639 3.84 -0.162 1.25 -0.518 -- -3.9 -0.0149 12.6 78.31 4581 -- --
196.93 0.654 3.85 -0.145 1.24 -0.708 -- -- -0.0692 12.4 53.11 14179 -- --
265.42 0.763 3.85 -0.166 -- 1.37 -- -1.68 0.0301 -- 83.79 5365 -- --
215.06 0.688 3.83 -0.0634 1.26 -- -0.561 -- -0.00801 12.6 -- -- -- --
216.41 0.689 3.83 -0.085 1.26 -- -- -- -0.011 12.5 -- -- -- --
264.28 0.76 3.86 -0.11 -- 1.39 -- -- -0.0412 -- 142.5 22631 -- --
197.77 0.655 3.85 -- 1.25 -0.75 -- -- -0.0779 12.6 52.34 14064 -- --
316.25 0.831 3.86 -0.129 -- -- -- -- -0.0323 -- -- -- -- --
216.6 0.688 3.83 -- 1.26 -- -- -- -0.00155 12.5 -- -- -- --
264.6 0.76 3.86 -- -- 1.4 -- -- -0.029 -- 142.5 22631 -- --
316.68 0.831 3.85 -- -- -- -- -- -0.018 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 173.58 wind 5.0 43200 < th dose dependent rect. 1 1
4 175.59 precipitation 0.1 14400 < th dose independent rect. 4 6
5 175.59 precipitation 0.1 14400 < th dose dependent rect. 4 6
6 175.90 precipitation 0.1 14400 > th dose independent rect. 4 6
7 176.08 precipitation 0.1 14400 > th dose dependent rect. 4 6
12 177.12 precipitation 0.1 14400 < th dose independent rect. 5 3
13 177.12 precipitation 0.1 14400 < th dose dependent rect. 5 3
14 177.20 precipitation 0.1 14400 > th dose independent rect. 5 3
16 177.40 precipitation 0.1 14400 > th dose dependent rect. 5 3
22 177.57 precipitation 0.1 14400 > th dose independent rect. 4 12
23 177.60 precipitation 0.1 14400 < th dose independent rect. 4 12
24 177.60 precipitation 0.1 14400 < th dose dependent rect. 4 12
25 177.64 precipitation 0.1 14400 > th dose dependent rect. 4 9
30 178.01 humidity 90.0 14400 > th dose dependent rect. 7 3
33 178.09 precipitation 0.1 14400 > th dose independent rect. 4 10
34 178.10 wind 1.0 43200 > th dose dependent rect. 1 1
36 178.14 precipitation 0.1 14400 < th dose independent rect. 4 10
37 178.14 precipitation 0.1 14400 < th dose dependent rect. 4 10
43 178.29 humidity 80.0 14400 > th dose independent rect. 13 1
44 178.34 humidity 90.0 14400 > th dose dependent rect. 9 1
52 178.62 humidity 90.0 14400 > th dose dependent rect. 7 7
54 178.67 humidity 90.0 14400 > th dose dependent rect. 7 1
58 178.96 wind 9.0 14400 > th dose independent rect. 6 5
59 179.10 wind 9.0 14400 < th dose independent rect. 6 5
63 179.18 wind 3.0 43200 < th dose independent rect. 1 2
67 179.39 humidity 90.0 14400 > th dose dependent rect. 7 9
70 179.47 humidity 80.0 14400 < th dose independent rect. 13 1
73 179.57 wind 3.0 43200 < th dose dependent rect. 5 2
75 179.74 wind 3.0 43200 > th dose independent rect. 1 2
80 179.83 wind 9.0 14400 < th dose independent rect. 5 7
83 179.97 wind 9.0 14400 < th dose independent rect. 4 9
89 180.19 wind 5.0 43200 < th dose dependent rect. 22 9
92 180.24 precipitation 0.1 14400 > th dose dependent rect. 4 12
94 180.32 wind 9.0 43200 < th dose dependent rect. 5 2
105 180.59 radiation 1.0 4320 < th dose independent rect. 6 9
108 180.66 wind 3.0 43200 < th dose independent rect. 5 2
110 180.67 wind 1.0 43200 > th dose dependent rect. 5 2
112 180.71 radiation 1.0 4320 > th dose independent rect. 6 9
125 180.96 wind 9.0 14400 > th dose dependent rect. 5 8
129 181.03 humidity 90.0 14400 > th dose independent rect. 9 1
130 181.03 wind 9.0 14400 < th dose independent rect. 1 12
139 181.22 wind 3.0 43200 > th dose independent rect. 5 2
140 181.23 radiation 1.0 4320 < th dose independent rect. 6 7
146 181.33 radiation 1.0 4320 > th dose independent rect. 6 7
151 181.38 radiation 1.0 4320 < th dose independent rect. 6 5
152 181.39 precipitation 0.1 14400 > th dose independent rect. 7 1
153 181.39 precipitation 0.1 14400 > th dose dependent rect. 7 1
155 181.40 wind 9.0 14400 > th dose independent rect. 9 2
158 181.41 radiation 1.0 4320 > th dose independent rect. 6 5
175 181.63 humidity 90.0 14400 > th dose independent rect. 7 3
184 181.73 humidity 70.0 1440 > th dose dependent rect. 9 3
188 181.82 humidity 70.0 1440 > th dose independent rect. 10 1
197 181.88 wind 1.0 43200 > th dose dependent rect. 22 9
218 182.17 radiation 1.0 4320 < th dose dependent rect. 6 4
220 182.18 precipitation 0.1 14400 < th dose independent rect. 7 1
221 182.18 precipitation 0.1 14400 < th dose dependent rect. 7 1
229 182.24 humidity 80.0 14400 > th dose independent rect. 10 5
236 182.27 radiation 1.0 4320 < th dose dependent rect. 6 6
250 182.39 humidity 90.0 14400 > th dose independent rect. 7 1
278 182.66 humidity 90.0 14400 > th dose independent rect. 7 7
279 182.66 wind 3.0 43200 > th dose independent rect. 23 8
282 182.68 wind 3.0 43200 < th dose independent rect. 23 8
293 182.79 wind 3.0 43200 > th dose independent rect. 1 6
295 182.81 wind 3.0 43200 < th dose independent rect. 1 6
324 183.06 precipitation 0.1 14400 > th dose independent rect. 14 2
326 183.06 precipitation 0.1 14400 > th dose dependent rect. 14 2
332 183.10 precipitation 0.1 14400 > th dose independent sin 3 NA
337 183.14 precipitation 0.1 14400 < th dose independent sin 3 NA
338 183.14 precipitation 0.1 14400 < th dose dependent sin 3 NA
343 183.17 wind 9.0 14400 > th dose dependent rect. 9 4
362 183.28 humidity 90.0 14400 > th dose dependent rect. 20 1
370 183.35 precipitation 0.1 14400 < th dose independent rect. 14 2
371 183.35 precipitation 0.1 14400 < th dose dependent rect. 14 2
379 183.42 humidity 80.0 14400 > th dose dependent rect. 12 2
380 183.43 wind 5.0 43200 < th dose dependent rect. 23 5
388 183.50 temperature 25.0 14400 > th dose independent rect. 10 4
390 183.51 temperature 25.0 14400 < th dose independent rect. 10 1
391 183.51 wind 9.0 43200 > th dose independent rect. 9 5
396 183.56 humidity 80.0 1440 < th dose independent rect. 10 2
398 183.57 temperature 25.0 14400 > th dose independent rect. 13 1
409 183.61 humidity 80.0 1440 < th dose independent rect. 8 5
419 183.68 humidity 80.0 14400 < th dose independent rect. 10 5
457 183.91 wind 1.0 43200 < th dose independent rect. 20 11
463 183.95 humidity 80.0 1440 > th dose independent rect. 8 5
478 184.02 wind 1.0 14400 > th dose dependent rect. 24 6
480 184.05 humidity 90.0 14400 < th dose independent rect. 7 7
481 184.06 humidity 90.0 14400 < th dose independent rect. 8 1
493 184.10 humidity 90.0 14400 > th dose dependent rect. 16 1
525 184.22 humidity 80.0 14400 < th dose independent rect. 10 1
533 184.26 wind 3.0 43200 > th dose independent rect. 23 5
535 184.27 humidity 90.0 14400 > th dose independent rect. 20 1
539 184.28 wind 1.0 43200 < th dose independent rect. 18 14
561 184.36 temperature 25.0 14400 < th dose independent rect. 10 6
586 184.45 temperature 20.0 270 > th dose independent rect. 4 10
593 184.49 wind 9.0 43200 > th dose independent rect. 4 10
613 184.58 precipitation 0.1 14400 > th dose dependent rect. 19 1
671 184.79 temperature 20.0 14400 < th dose independent rect. 20 1
708 184.88 humidity 90.0 4320 < th dose dependent rect. 9 2
710 184.89 radiation 30.0 43200 > th dose independent rect. 11 1
717 184.92 humidity 80.0 4320 < th dose dependent rect. 22 13
719 184.94 temperature 25.0 14400 < th dose independent rect. 15 1
722 184.94 wind 1.0 43200 > th dose independent rect. 18 14
732 184.97 wind 3.0 43200 < th dose independent rect. 1 12
739 185.00 temperature 25.0 14400 < th dose dependent rect. 9 1
748 185.01 temperature 25.0 270 < th dose dependent rect. 23 21
754 185.03 temperature 25.0 14400 < th dose independent rect. 13 1
776 185.07 wind 3.0 43200 < th dose independent rect. 23 14
886 185.38 wind 3.0 43200 > th dose independent rect. 1 13
929 185.51 wind 1.0 43200 < th dose dependent rect. 18 14
943 185.53 humidity 90.0 14400 > th dose dependent rect. 3 19
945 185.54 wind 3.0 43200 > th dose independent rect. 23 14
991 185.64 humidity 80.0 1440 < th dose independent rect. 5 8