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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0296800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.9 (0.0494) R2 : 0.196
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.93 (0.685) R2dE : 0.132 R2E : 0.126
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.576 (0.104) R2dN8 : 0.0697 R2N8 : 0.0633
σ : 0.929
deviance : 397.61
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 18.6
memory length : 96
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.34
open length of G : 2.31

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
379.43 0.915 4.89 -0.0908 0.302 3.29 -1.38 -8.92 -0.567 19.1 18.78 96 1.96 2.77
390.12 0.92 4.89 -0.124 0.265 5.64 -1.25 -- -0.571 19.9 18.61 93 2.45 2.28
383.09 0.912 4.89 -0.074 0.293 3.55 -- -8.2 -0.576 19.8 18.56 100 1.94 2.64
392.49 0.923 4.91 -0.0974 0.305 5.87 -- -- -0.579 19.7 18.63 94 2.4 2.32
387.53 0.917 4.89 -0.0772 -- 3.57 -- -7.86 -0.587 -- 18.6 101 1.97 2.62
456.01 1 4.92 -0.316 0.215 -- -0.662 -- -0.659 22.4 -- -- -- --
457.75 1 4.92 -0.289 0.223 -- -- -- -0.657 21.9 -- -- -- --
397.34 0.928 4.9 -0.108 -- 5.86 -- -- -0.588 -- 18.6 95 2.38 2.29
392.64 0.923 4.9 -- 0.306 5.99 -- -- -0.567 19.7 18.61 95 2.35 2.34
460.72 1 4.92 -0.286 -- -- -- -- -0.657 -- -- -- -- --
459.95 1 4.91 -- 0.222 -- -- -- -0.625 21.8 -- -- -- --
397.61 0.929 4.9 -- -- 5.93 -- -- -0.576 -- 18.6 96 2.34 2.31
462.88 1 4.91 -- -- -- -- -- -0.625 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 387.19 temperature 20 90 < th dose dependent rect. 2 3
5 396.72 temperature 20 90 < th dose dependent rect. 2 7
7 398.26 temperature 20 90 < th dose independent rect. 3 2
22 403.10 temperature 20 270 < th dose dependent rect. 23 5
68 408.02 humidity 90 14400 > th dose dependent rect. 24 2
70 408.66 temperature 30 90 < th dose dependent rect. 11 20
80 409.65 temperature 30 720 < th dose dependent rect. 16 13
83 409.80 temperature 15 720 > th dose dependent rect. 14 16
84 409.84 temperature 30 270 < th dose dependent rect. 11 18
85 409.86 temperature 30 1440 < th dose dependent rect. 4 1
86 409.89 radiation 10 4320 < th dose dependent rect. 19 10
93 410.24 humidity 90 14400 > th dose dependent rect. 21 7
98 410.33 radiation 20 14400 < th dose independent rect. 2 4
101 410.36 temperature 25 90 < th dose dependent rect. 14 16
107 410.51 temperature 25 10 < th dose dependent rect. 14 17
114 410.73 temperature 15 1440 > th dose dependent rect. 4 1
116 410.74 temperature 25 10 < th dose dependent rect. 12 19
120 410.79 temperature 10 720 > th dose dependent rect. 14 18
129 410.95 temperature 20 270 < th dose independent rect. 23 5
133 411.03 radiation 1 14400 < th dose dependent rect. 18 8
141 411.09 radiation 1 14400 < th dose dependent rect. 18 3
189 411.60 radiation 1 14400 < th dose independent rect. 18 8
192 411.61 humidity 90 14400 > th dose independent rect. 21 8
194 411.63 wind 9 43200 < th dose independent rect. 5 1
200 411.68 radiation 1 14400 < th dose independent rect. 18 3
212 411.73 temperature 15 720 > th dose dependent sin 14 NA
214 411.76 temperature 25 90 < th dose dependent sin 8 NA
223 411.86 humidity 90 14400 > th dose independent rect. 22 6
286 412.51 temperature 10 270 > th dose dependent rect. 19 14
304 412.64 temperature 25 10 < th dose dependent sin 7 NA
309 412.68 temperature 15 720 > th dose dependent rect. 11 18
325 412.83 radiation 1 4320 < th dose dependent rect. 21 8
330 412.85 temperature 30 720 < th dose dependent sin 14 NA
334 412.88 radiation 1 4320 > th dose independent rect. 17 2
355 413.01 radiation 1 4320 < th dose dependent sin 13 NA
359 413.04 radiation 20 14400 < th dose independent rect. 5 1
390 413.23 humidity 80 43200 < th dose independent rect. 17 1
413 413.35 radiation 1 4320 < th dose dependent rect. 16 18
425 413.43 humidity 80 43200 > th dose independent rect. 17 1
433 413.44 wind 9 43200 > th dose dependent rect. 5 1
451 413.51 humidity 90 14400 > th dose independent rect. 23 2
454 413.52 radiation 1 14400 < th dose dependent rect. 24 5
460 413.56 temperature 20 90 < th dose independent rect. 2 9
461 413.56 temperature 25 90 < th dose dependent rect. 17 13
481 413.66 humidity 90 14400 > th dose dependent sin 10 NA
557 413.90 temperature 10 90 > th dose dependent sin 8 NA
596 414.01 radiation 1 14400 < th dose dependent rect. 4 2
643 414.14 radiation 10 14400 < th dose independent rect. 22 8
662 414.22 wind 9 43200 < th dose independent rect. 24 1
692 414.29 radiation 1 4320 < th dose dependent rect. 8 22
694 414.31 radiation 30 14400 < th dose independent rect. 21 10
726 414.42 radiation 20 14400 > th dose dependent rect. 17 14
763 414.52 temperature 20 270 < th dose dependent rect. 23 9
792 414.61 radiation 20 14400 < th dose independent rect. 18 13
812 414.66 radiation 1 4320 < th dose dependent rect. 4 17
814 414.66 temperature 20 1440 > th dose dependent rect. 20 22
815 414.67 radiation 20 14400 > th dose dependent rect. 6 1
828 414.67 radiation 1 4320 < th dose dependent rect. 4 15
834 414.67 radiation 1 4320 < th dose dependent rect. 4 21
837 414.67 radiation 1 4320 < th dose dependent rect. 23 22
846 414.68 radiation 1 4320 < th dose dependent rect. 23 20
855 414.69 radiation 1 4320 < th dose dependent no NA NA
875 414.70 radiation 1 4320 < th dose dependent rect. 20 23
915 414.78 temperature 30 720 < th dose dependent rect. 16 5
957 414.86 temperature 15 270 > th dose dependent sin 10 NA