Os05g0296700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os05g0296700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 207.56 | 0.677 | 8.62 | 0.416 | 2.21 | -1.53 | -0.742 | -0.307 | -0.776 | 7.42 | 19.8 | 291 | 19.2 | 19.1 |
| 206.87 | 0.67 | 8.61 | 0.428 | 2.23 | -1.54 | -0.776 | -- | -0.77 | 7.38 | 19.5 | 291 | 19.2 | 19 |
| 207 | 0.67 | 8.63 | 0.407 | 2.23 | -1.6 | -- | -0.691 | -0.783 | 7.39 | 19.5 | 308 | 18.9 | 19.1 |
| 208.4 | 0.672 | 8.61 | 0.462 | 2.29 | -1.61 | -- | -- | -0.778 | 7.42 | 19.5 | 300 | 19.1 | 18.9 |
| 338.33 | 0.857 | 8.63 | 0.213 | -- | -1.1 | -- | -0.481 | -0.56 | -- | 21.78 | 888 | 18.7 | 20.5 |
| 291.21 | 0.8 | 8.67 | 0.0592 | 1.3 | -- | -0.989 | -- | -0.934 | 7.3 | -- | -- | -- | -- |
| 293.76 | 0.803 | 8.67 | 0.0392 | 1.29 | -- | -- | -- | -0.931 | 7.41 | -- | -- | -- | -- |
| 257.3 | 0.747 | 8.63 | 0.465 | -- | -1.47 | -- | -- | -0.547 | -- | 21.3 | 447 | 6.02 | 18 |
| 213.58 | 0.681 | 8.62 | -- | 2.24 | -1.49 | -- | -- | -0.824 | 7.39 | 19.49 | 289 | 19.2 | 18.8 |
| 382.98 | 0.914 | 8.7 | 0.06 | -- | -- | -- | -- | -0.91 | -- | -- | -- | -- | -- |
| 293.8 | 0.802 | 8.67 | -- | 1.29 | -- | -- | -- | -0.935 | 7.41 | -- | -- | -- | -- |
| 257.05 | 0.747 | 8.67 | -- | -- | -1.69 | -- | -- | -0.76 | -- | 20.31 | 455 | 6.5 | 18.1 |
| 383.08 | 0.914 | 8.7 | -- | -- | -- | -- | -- | -0.917 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 212.32 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 19 |
| 4 | 215.14 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 17 |
| 5 | 216.61 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 19 |
| 11 | 217.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 9 |
| 13 | 217.93 | humidity | 80 | 270 | < th | dose dependent | rect. | 15 | 17 |
| 24 | 219.98 | humidity | 80 | 270 | < th | dose dependent | rect. | 16 | 3 |
| 32 | 220.82 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 45 | 221.89 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 58 | 222.96 | humidity | 80 | 270 | < th | dose dependent | sin | 13 | NA |
| 64 | 223.34 | humidity | 70 | 270 | < th | dose independent | rect. | 15 | 17 |
| 89 | 225.25 | humidity | 60 | 270 | < th | dose dependent | rect. | 16 | 19 |
| 91 | 225.37 | humidity | 50 | 270 | > th | dose independent | rect. | 4 | 23 |
| 92 | 225.38 | humidity | 50 | 270 | > th | dose independent | rect. | 10 | 15 |
| 96 | 225.58 | humidity | 70 | 270 | < th | dose independent | rect. | 15 | 5 |
| 122 | 226.50 | humidity | 70 | 90 | < th | dose dependent | rect. | 18 | 13 |
| 138 | 226.73 | radiation | 1 | 270 | > th | dose dependent | rect. | 16 | 14 |
| 147 | 227.11 | humidity | 70 | 270 | < th | dose independent | sin | 13 | NA |
| 149 | 227.12 | humidity | 60 | 270 | < th | dose independent | rect. | 17 | 2 |
| 150 | 227.17 | humidity | 50 | 270 | < th | dose independent | sin | 11 | NA |
| 151 | 227.19 | humidity | 50 | 270 | < th | dose dependent | sin | 11 | NA |
| 153 | 227.23 | humidity | 50 | 270 | > th | dose independent | sin | 12 | NA |
| 155 | 227.25 | humidity | 70 | 30 | < th | dose independent | rect. | 16 | 16 |
| 161 | 227.31 | humidity | 70 | 30 | > th | dose independent | sin | 12 | NA |
| 164 | 227.37 | temperature | 30 | 270 | > th | dose dependent | rect. | 16 | 3 |
| 179 | 227.45 | humidity | 50 | 270 | < th | dose independent | rect. | 15 | 20 |
| 188 | 227.54 | humidity | 50 | 270 | < th | dose independent | rect. | 15 | 3 |
| 218 | 227.60 | humidity | 50 | 270 | < th | dose dependent | rect. | 15 | 3 |
| 395 | 227.97 | humidity | 50 | 270 | < th | dose independent | rect. | 16 | 23 |
| 435 | 228.08 | humidity | 50 | 270 | < th | dose independent | rect. | 11 | 7 |
| 455 | 228.13 | humidity | 50 | 270 | < th | dose dependent | no | NA | NA |
| 610 | 228.16 | humidity | 50 | 270 | < th | dose independent | no | NA | NA |
| 761 | 228.20 | temperature | 30 | 90 | > th | dose independent | rect. | 18 | 1 |
| 782 | 228.33 | humidity | 50 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 800 | 228.39 | humidity | 70 | 30 | < th | dose independent | sin | 12 | NA |
| 835 | 228.64 | temperature | 30 | 270 | > th | dose independent | rect. | 16 | 3 |
| 856 | 228.73 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 928 | 229.19 | humidity | 50 | 270 | > th | dose independent | sin | 19 | NA |