Os05g0296600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os05g0296600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 98.94 | 0.467 | 12.7 | -2.15 | 0.318 | -0.73 | 2.15 | 0.694 | -1.02 | 5.24 | 71 | 1281 | -- | -- |
| 99.94 | 0.466 | 12.7 | -2.12 | 0.334 | -0.706 | 2.21 | -- | -1.03 | 5.5 | 71 | 1241 | -- | -- |
| 109.24 | 0.487 | 12.7 | -2.12 | 0.388 | -0.789 | -- | 0.454 | -1.02 | 7.14 | 70.37 | 1201 | -- | -- |
| 109.14 | 0.487 | 12.7 | -2.01 | 0.386 | -0.745 | -- | -- | -0.91 | 6.98 | 68.8 | 1215 | -- | -- |
| 115.57 | 0.501 | 12.7 | -2.12 | -- | -0.792 | -- | 0.536 | -0.97 | -- | 70 | 1270 | -- | -- |
| 117.9 | 0.509 | 12.7 | -1.88 | 0.391 | -- | 2.17 | -- | -0.883 | 4.9 | -- | -- | -- | -- |
| 129.96 | 0.534 | 12.7 | -1.88 | 0.408 | -- | -- | -- | -0.893 | 5.21 | -- | -- | -- | -- |
| 115.83 | 0.501 | 12.7 | -2.04 | -- | -0.756 | -- | -- | -0.898 | -- | 69 | 1259 | -- | -- |
| 145.96 | 0.563 | 12.6 | -- | 0.375 | -1.64 | -- | -- | -0.537 | 7.73 | 62.01 | 47520 | -- | -- |
| 138.67 | 0.55 | 12.7 | -1.87 | -- | -- | -- | -- | -0.883 | -- | -- | -- | -- | -- |
| 223.28 | 0.699 | 12.7 | -- | 0.376 | -- | -- | -- | -0.684 | 5.39 | -- | -- | -- | -- |
| 149.92 | 0.57 | 12.6 | -- | -- | -1.7 | -- | -- | -0.563 | -- | 62.72 | 47520 | -- | -- |
| 230.65 | 0.709 | 12.7 | -- | -- | -- | -- | -- | -0.676 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 95.99 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 96.93 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 16 |
| 5 | 96.95 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 7 |
| 7 | 96.95 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 12 |
| 9 | 96.96 | radiation | 10 | 1440 | < th | dose independent | rect. | 12 | 10 |
| 32 | 97.02 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 39 | 97.21 | humidity | 90 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 40 | 97.48 | radiation | 10 | 1440 | < th | dose independent | sin | 16 | NA |
| 55 | 97.68 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 65 | 97.89 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 67 | 97.99 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 70 | 98.01 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 72 | 98.01 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 74 | 98.03 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 78 | 98.04 | radiation | 10 | 1440 | < th | dose dependent | sin | 21 | NA |
| 96 | 98.29 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 102 | 98.38 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 9 |
| 103 | 98.38 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 217 | 99.28 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 221 | 99.31 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 1 |
| 222 | 99.32 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 231 | 99.36 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 240 | 99.39 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 265 | 99.52 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 274 | 99.63 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 280 | 99.65 | temperature | 20 | 30 | > th | dose independent | rect. | 9 | 19 |
| 297 | 99.71 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 13 |
| 354 | 99.91 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 358 | 99.92 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 364 | 99.95 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 10 |
| 367 | 99.97 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 18 |
| 369 | 99.98 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 16 |
| 373 | 99.99 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 13 |
| 383 | 100.01 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 3 |
| 388 | 100.05 | radiation | 10 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 443 | 100.15 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 459 | 100.20 | humidity | 90 | 720 | > th | dose independent | rect. | 19 | 6 |
| 461 | 100.20 | humidity | 50 | 720 | > th | dose dependent | sin | 14 | NA |
| 473 | 100.24 | temperature | 15 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 480 | 100.30 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 481 | 100.30 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 522 | 100.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 593 | 100.74 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 597 | 100.74 | humidity | 90 | 720 | > th | dose dependent | rect. | 8 | 17 |
| 615 | 100.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 621 | 100.82 | humidity | 90 | 1440 | < th | dose dependent | rect. | 23 | 17 |
| 626 | 100.84 | humidity | 90 | 1440 | < th | dose dependent | rect. | 2 | 14 |
| 639 | 100.87 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 699 | 100.95 | humidity | 90 | 1440 | < th | dose dependent | rect. | 23 | 20 |
| 738 | 101.02 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 800 | 101.09 | humidity | 90 | 720 | > th | dose dependent | rect. | 11 | 14 |
| 803 | 101.10 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 810 | 101.10 | humidity | 60 | 720 | > th | dose dependent | rect. | 11 | 17 |
| 822 | 101.12 | radiation | 10 | 1440 | < th | dose dependent | rect. | 2 | 22 |
| 825 | 101.13 | radiation | 10 | 1440 | < th | dose dependent | rect. | 2 | 17 |
| 830 | 101.13 | radiation | 10 | 1440 | < th | dose dependent | rect. | 23 | 20 |
| 837 | 101.14 | radiation | 10 | 1440 | < th | dose dependent | no | NA | NA |
| 897 | 101.19 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 21 |
| 919 | 101.24 | temperature | 20 | 30 | > th | dose independent | rect. | 20 | 8 |
| 922 | 101.24 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 947 | 101.27 | humidity | 90 | 1440 | < th | dose dependent | sin | 1 | NA |
| 973 | 101.32 | humidity | 80 | 1440 | > th | dose independent | sin | 1 | NA |
| 981 | 101.32 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 14 |