Os05g0294800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os05g0294800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.8 | 0.239 | 10.7 | 0.304 | 0.694 | 0.521 | -0.417 | -0.121 | 0.163 | 20.7 | 21.7 | 3793 | -- | -- |
| 25.82 | 0.237 | 10.7 | 0.34 | 0.689 | 0.526 | -0.43 | -- | 0.173 | 20.7 | 21.6 | 3691 | -- | -- |
| 26.34 | 0.239 | 10.7 | 0.318 | 0.696 | 0.512 | -- | -0.149 | 0.16 | 20.7 | 21.6 | 3691 | -- | -- |
| 26.38 | 0.239 | 10.7 | 0.356 | 0.69 | 0.525 | -- | -- | 0.173 | 20.8 | 21.61 | 3691 | -- | -- |
| 52.42 | 0.337 | 10.7 | 0.327 | -- | 0.56 | -- | -0.284 | 0.137 | -- | 21.9 | 2189 | -- | -- |
| 33.34 | 0.271 | 10.7 | 0.647 | 0.712 | -- | -0.375 | -- | 0.355 | 20.8 | -- | -- | -- | -- |
| 33.8 | 0.272 | 10.7 | 0.659 | 0.711 | -- | -- | -- | 0.355 | 20.9 | -- | -- | -- | -- |
| 49.85 | 0.329 | 10.7 | 0.45 | -- | 0.556 | -- | -- | 0.177 | -- | 21.9 | 774 | -- | -- |
| 28.57 | 0.249 | 10.7 | -- | 0.703 | 0.682 | -- | -- | 0.0824 | 20.8 | 21.1 | 7856 | -- | -- |
| 62.72 | 0.37 | 10.7 | 0.659 | -- | -- | -- | -- | 0.35 | -- | -- | -- | -- | -- |
| 45.24 | 0.315 | 10.7 | -- | 0.71 | -- | -- | -- | 0.281 | 21 | -- | -- | -- | -- |
| 54.98 | 0.345 | 10.7 | -- | -- | 0.661 | -- | -- | 0.104 | -- | 21.7 | 796 | -- | -- |
| 74.17 | 0.402 | 10.7 | -- | -- | -- | -- | -- | 0.277 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.92 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 2 | 24.92 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 40 | 25.82 | radiation | 30 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 44 | 25.93 | radiation | 10 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 59 | 25.95 | radiation | 40 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 63 | 25.98 | radiation | 1 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 77 | 26.08 | radiation | 20 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 86 | 26.10 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 88 | 26.11 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 94 | 26.13 | radiation | 20 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 127 | 26.19 | radiation | 20 | 43200 | < th | dose independent | rect. | 12 | 3 |
| 130 | 26.20 | radiation | 20 | 43200 | < th | dose dependent | sin | 7 | NA |
| 144 | 26.21 | radiation | 30 | 43200 | < th | dose dependent | rect. | 6 | 9 |
| 303 | 26.28 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 405 | 26.30 | radiation | 10 | 43200 | < th | dose independent | rect. | 7 | 9 |
| 406 | 26.30 | radiation | 20 | 43200 | > th | dose independent | rect. | 12 | 22 |
| 439 | 26.31 | radiation | 20 | 14400 | < th | dose independent | rect. | 22 | 8 |
| 448 | 26.31 | wind | 1 | 43200 | < th | dose dependent | rect. | 16 | 10 |
| 488 | 26.33 | radiation | 20 | 43200 | > th | dose independent | sin | 10 | NA |
| 517 | 26.34 | radiation | 20 | 43200 | > th | dose independent | sin | 7 | NA |
| 529 | 26.34 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 548 | 26.35 | radiation | 40 | 43200 | > th | dose independent | sin | 17 | NA |
| 549 | 26.35 | radiation | 20 | 43200 | > th | dose independent | sin | 5 | NA |
| 625 | 26.36 | radiation | 20 | 43200 | > th | dose independent | rect. | 7 | 9 |
| 713 | 26.37 | radiation | 1 | 43200 | > th | dose dependent | rect. | 6 | 9 |
| 726 | 26.37 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 815 | 26.40 | radiation | 20 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 850 | 26.40 | radiation | 30 | 43200 | < th | dose dependent | no | NA | NA |
| 951 | 26.41 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |