Os05g0294600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os05g0294600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.39 | 0.246 | 11.3 | 0.701 | 0.67 | 0.639 | -0.0887 | 0.755 | -0.241 | 15 | 40.45 | 279 | -- | -- |
| 27.72 | 0.245 | 11.3 | 0.688 | 0.67 | 0.657 | 0.0348 | -- | -0.243 | 15 | 40.65 | 279 | -- | -- |
| 27.4 | 0.244 | 11.3 | 0.699 | 0.671 | 0.636 | -- | 0.677 | -0.242 | 15 | 40.64 | 280 | -- | -- |
| 27.73 | 0.245 | 11.3 | 0.69 | 0.668 | 0.653 | -- | -- | -0.242 | 15 | 40.59 | 279 | -- | -- |
| 43.58 | 0.307 | 11.3 | 0.707 | -- | 1.18 | -- | 0.922 | -0.303 | -- | 39.58 | 344 | -- | -- |
| 31.7 | 0.264 | 11.3 | 0.704 | 0.846 | -- | 0.0632 | -- | -0.203 | 15 | -- | -- | -- | -- |
| 31.71 | 0.264 | 11.3 | 0.705 | 0.847 | -- | -- | -- | -0.202 | 15 | -- | -- | -- | -- |
| 43.77 | 0.308 | 11.3 | 0.652 | -- | 1.24 | -- | -- | -0.305 | -- | 35.03 | 321 | -- | -- |
| 40.25 | 0.295 | 11.3 | -- | 0.659 | 0.578 | -- | -- | -0.278 | 14.9 | 40.07 | 337 | -- | -- |
| 72.87 | 0.399 | 11.3 | 0.669 | -- | -- | -- | -- | -0.224 | -- | -- | -- | -- | -- |
| 44.81 | 0.313 | 11.3 | -- | 0.833 | -- | -- | -- | -0.281 | 15 | -- | -- | -- | -- |
| 40.78 | 0.297 | 11.3 | -- | -- | 0.779 | -- | -- | -0.378 | -- | 10.06 | 278 | -- | -- |
| 84.67 | 0.429 | 11.3 | -- | -- | -- | -- | -- | -0.298 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.38 | humidity | 70.0 | 90 | > th | dose independent | rect. | 17 | 6 |
| 3 | 24.57 | temperature | 30.0 | 90 | < th | dose independent | rect. | 17 | 6 |
| 5 | 24.64 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 17 | 6 |
| 7 | 24.73 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 9 | 14 |
| 9 | 24.75 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 6 |
| 12 | 24.79 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 17 | 2 |
| 13 | 24.80 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 17 | 6 |
| 16 | 24.83 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 11 | 12 |
| 22 | 24.87 | radiation | 1.0 | 30 | < th | dose independent | rect. | 17 | 6 |
| 24 | 24.87 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 23 | 18 |
| 25 | 24.88 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 2 |
| 28 | 24.89 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 13 | 10 |
| 31 | 24.91 | humidity | 70.0 | 270 | > th | dose independent | rect. | 17 | 2 |
| 33 | 24.92 | radiation | 1.0 | 30 | < th | dose independent | rect. | 11 | 12 |
| 37 | 24.92 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 16 | 4 |
| 41 | 24.96 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 6 | 17 |
| 42 | 24.97 | humidity | 60.0 | 270 | > th | dose independent | rect. | 16 | 4 |
| 45 | 24.98 | radiation | 1.0 | 30 | < th | dose independent | rect. | 13 | 10 |
| 48 | 24.98 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 11 | 12 |
| 51 | 25.01 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 4 |
| 52 | 25.01 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 16 | 3 |
| 95 | 25.19 | radiation | 1.0 | 30 | < th | dose independent | rect. | 6 | 17 |
| 104 | 25.25 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 23 | 18 |
| 107 | 25.25 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 23 | 18 |
| 123 | 25.34 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 17 | 6 |
| 125 | 25.35 | radiation | 10.0 | 270 | < th | dose independent | rect. | 15 | 5 |
| 138 | 25.40 | temperature | 10.0 | 90 | > th | dose independent | rect. | 17 | 6 |
| 142 | 25.40 | temperature | 10.0 | 90 | > th | dose independent | rect. | 23 | 18 |
| 145 | 25.42 | wind | 9.0 | 90 | < th | dose independent | rect. | 23 | 18 |
| 148 | 25.43 | wind | 9.0 | 90 | < th | dose independent | rect. | 17 | 6 |
| 151 | 25.45 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 17 | 6 |
| 161 | 25.48 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 9 | 7 |
| 165 | 25.49 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 175 | 25.52 | radiation | 10.0 | 270 | < th | dose independent | rect. | 16 | 3 |
| 178 | 25.52 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 10 | 5 |
| 185 | 25.53 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 10 |
| 187 | 25.54 | wind | 1.0 | 90 | > th | dose independent | rect. | 17 | 6 |
| 189 | 25.55 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 8 | 12 |
| 197 | 25.58 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 18 |
| 198 | 25.58 | radiation | 1.0 | 30 | < th | dose dependent | sin | 21 | NA |
| 205 | 25.59 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 14 |
| 209 | 25.59 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 14 |
| 230 | 25.66 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 17 | 6 |
| 239 | 25.68 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 20 |
| 271 | 25.76 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 6 | 10 |
| 283 | 25.78 | radiation | 40.0 | 270 | < th | dose independent | rect. | 1 | 21 |
| 304 | 25.83 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 8 | 12 |
| 305 | 25.83 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 19 |
| 327 | 25.90 | radiation | 1.0 | 30 | < th | dose independent | sin | 20 | NA |
| 332 | 25.91 | radiation | 1.0 | 30 | > th | dose independent | sin | 20 | NA |
| 351 | 25.93 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 23 | 18 |
| 361 | 25.95 | humidity | 70.0 | 270 | > th | dose independent | rect. | 1 | 20 |
| 370 | 25.97 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 10 |
| 371 | 25.97 | humidity | 70.0 | 270 | > th | dose independent | rect. | 2 | 18 |
| 372 | 25.97 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 19 | 5 |
| 377 | 25.98 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 23 | 18 |
| 408 | 26.03 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 17 | 6 |
| 411 | 26.03 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 17 | 6 |
| 431 | 26.07 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 23 | 18 |
| 463 | 26.14 | radiation | 40.0 | 270 | < th | dose independent | rect. | 7 | 13 |
| 476 | 26.15 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 18 | 6 |
| 479 | 26.15 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 18 | 6 |
| 481 | 26.15 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 18 | 6 |
| 493 | 26.15 | radiation | 40.0 | 270 | < th | dose independent | rect. | 9 | 12 |
| 494 | 26.15 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 24 | 18 |
| 512 | 26.18 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 10 |
| 513 | 26.18 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 10 |
| 514 | 26.18 | temperature | 10.0 | 270 | > th | dose independent | rect. | 11 | 14 |
| 518 | 26.19 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 10 |
| 519 | 26.19 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 22 |
| 525 | 26.19 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 22 |
| 527 | 26.20 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 19 |
| 536 | 26.21 | radiation | 10.0 | 270 | < th | dose independent | rect. | 9 | 11 |
| 550 | 26.22 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 19 | 5 |
| 556 | 26.22 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 19 | 5 |
| 557 | 26.22 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 19 | 5 |
| 583 | 26.22 | radiation | 40.0 | 270 | > th | dose independent | rect. | 12 | 22 |
| 614 | 26.26 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 14 |
| 635 | 26.27 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 10 |
| 659 | 26.30 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 19 |
| 665 | 26.30 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 19 |
| 666 | 26.30 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 21 |
| 669 | 26.31 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 12 | 2 |
| 677 | 26.32 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 10 |
| 678 | 26.32 | humidity | 70.0 | 90 | > th | dose independent | rect. | 9 | 13 |
| 681 | 26.32 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 19 |
| 685 | 26.32 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 19 | 5 |
| 687 | 26.32 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 695 | 26.33 | temperature | 25.0 | 30 | > th | dose independent | rect. | 12 | 6 |
| 702 | 26.34 | wind | 1.0 | 90 | > th | dose independent | rect. | 23 | 18 |
| 706 | 26.34 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 10 | 8 |
| 710 | 26.34 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 19 |
| 718 | 26.35 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 19 |
| 722 | 26.35 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 12 | 2 |
| 723 | 26.35 | humidity | 90.0 | 90 | < th | dose dependent | rect. | 12 | 5 |
| 734 | 26.36 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 12 | 2 |
| 748 | 26.37 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 781 | 26.40 | radiation | 1.0 | 30 | > th | dose independent | rect. | 12 | 7 |
| 861 | 26.45 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 3 |
| 862 | 26.45 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 17 | 3 |
| 867 | 26.45 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 18 | 5 |
| 869 | 26.45 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 21 |
| 873 | 26.45 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 18 | 5 |
| 883 | 26.46 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 3 |
| 886 | 26.46 | wind | 9.0 | 270 | < th | dose independent | rect. | 20 | 21 |
| 893 | 26.47 | temperature | 25.0 | 270 | > th | dose independent | rect. | 10 | 5 |
| 904 | 26.48 | temperature | 25.0 | 90 | > th | dose independent | rect. | 23 | 18 |
| 917 | 26.49 | wind | 9.0 | 30 | < th | dose dependent | rect. | 18 | 5 |
| 954 | 26.51 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 3 |
| 979 | 26.52 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 11 | 12 |
| 984 | 26.53 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 9 | 14 |