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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0291600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.05 (0.0259) R2 : 0.00122
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0407 (0.0545) R2dN8 : 0.00158 R2N8 : 0.00122
σ : 0.487
deviance : 109.07
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
95.06 0.458 3.04 0.268 0.294 0.476 0.235 1.29 0.0476 11.6 62 6271 -- --
97.02 0.459 3.03 0.216 0.33 0.483 0.283 -- 0.0664 11.6 63.01 7560 -- --
95 0.454 3.02 0.233 0.289 0.533 -- 1.38 0.0806 11.6 61 7574 -- --
97.19 0.459 3.03 0.201 0.302 0.497 -- -- 0.0737 11.7 63 7576 -- --
100.14 0.466 3.04 0.263 -- 0.579 -- 1.54 0.0482 -- 60.65 6816 -- --
100.75 0.471 3.03 0.277 0.308 -- 0.285 -- 0.0739 11.4 -- -- -- --
101.1 0.471 3.03 0.289 0.307 -- -- -- 0.075 11.4 -- -- -- --
102.12 0.471 3.04 0.168 -- 0.521 -- -- 0.0931 -- 65.26 8308 -- --
98.26 0.462 3.04 -- 0.305 0.511 -- -- 0.0542 11.6 63 7578 -- --
106.99 0.483 3.04 0.281 -- -- -- -- 0.0719 -- -- -- -- --
103.3 0.475 3.04 -- 0.304 -- -- -- 0.0428 11.3 -- -- -- --
102.81 0.472 3.04 -- -- 0.572 -- -- 0.0806 -- 65 8320 -- --
109.07 0.487 3.05 -- -- -- -- -- 0.0407 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 90.11 atmosphere 995.0 14400 > th dose independent rect. 11 3
2 90.39 atmosphere 995.0 14400 > th dose independent rect. 8 6
5 90.59 precipitation 0.1 1440 < th dose independent rect. 15 3
6 90.59 precipitation 0.1 1440 < th dose dependent rect. 15 3
13 91.08 precipitation 0.1 1440 > th dose independent rect. 16 2
18 91.56 atmosphere 1000.0 1440 > th dose independent rect. 8 1
21 91.82 atmosphere 1000.0 1440 < th dose independent rect. 8 1
26 91.91 precipitation 0.1 1440 > th dose dependent rect. 14 4
28 91.98 precipitation 0.1 1440 > th dose dependent rect. 9 9
32 92.03 atmosphere 1000.0 1440 < th dose dependent rect. 8 1
35 92.07 precipitation 0.1 1440 > th dose dependent rect. 6 12
39 92.17 wind 9.0 4320 < th dose independent rect. 17 18
57 92.39 wind 9.0 4320 > th dose dependent rect. 17 12
59 92.40 radiation 1.0 14400 < th dose dependent rect. 20 8
67 92.46 atmosphere 1000.0 90 > th dose dependent rect. 10 1
71 92.48 atmosphere 995.0 14400 < th dose dependent rect. 14 1
86 92.50 radiation 1.0 14400 < th dose dependent rect. 20 6
87 92.51 wind 9.0 4320 > th dose dependent rect. 17 1
93 92.55 precipitation 0.1 14400 > th dose dependent rect. 17 1
95 92.57 radiation 1.0 14400 < th dose dependent rect. 23 1
102 92.61 wind 1.0 90 > th dose dependent rect. 10 1
106 92.63 wind 9.0 4320 > th dose dependent rect. 16 19
109 92.66 wind 9.0 4320 > th dose independent rect. 17 18
138 92.73 precipitation 0.1 1440 > th dose independent rect. 9 9
142 92.76 precipitation 0.1 14400 < th dose independent rect. 17 1
145 92.76 precipitation 0.1 14400 < th dose dependent rect. 17 1
153 92.80 precipitation 0.1 1440 < th dose independent rect. 9 9
154 92.80 precipitation 0.1 1440 < th dose dependent rect. 9 9
155 92.81 atmosphere 995.0 14400 < th dose independent rect. 14 1
187 92.87 radiation 1.0 14400 < th dose dependent rect. 22 4
188 92.88 radiation 20.0 90 > th dose independent rect. 10 1
189 92.88 wind 9.0 4320 > th dose independent rect. 17 12
197 92.93 wind 9.0 43200 > th dose dependent rect. 20 1
215 93.01 wind 9.0 4320 > th dose dependent rect. 17 7
227 93.05 wind 9.0 4320 > th dose independent rect. 17 1
228 93.05 wind 9.0 4320 < th dose independent rect. 17 1
249 93.09 wind 9.0 14400 > th dose dependent rect. 20 11
254 93.10 wind 9.0 4320 < th dose independent rect. 17 12
282 93.16 wind 9.0 14400 < th dose independent rect. 20 1
285 93.17 wind 9.0 14400 > th dose independent rect. 20 1
344 93.29 wind 9.0 14400 < th dose independent rect. 18 3
361 93.33 temperature 30.0 90 < th dose independent rect. 10 1
367 93.34 wind 9.0 4320 > th dose dependent sin 12 NA
373 93.37 wind 9.0 14400 > th dose independent rect. 18 3
406 93.45 wind 9.0 4320 < th dose independent rect. 17 6
420 93.48 precipitation 0.1 90 < th dose independent rect. 11 23
422 93.48 precipitation 0.1 90 < th dose dependent rect. 11 23
431 93.52 wind 9.0 4320 > th dose independent rect. 17 7
436 93.52 wind 9.0 14400 > th dose independent rect. 20 10
463 93.56 atmosphere 1000.0 10 > th dose dependent rect. 10 2
468 93.57 wind 9.0 14400 < th dose independent rect. 20 12
470 93.57 temperature 15.0 10 > th dose dependent rect. 3 7
475 93.59 wind 1.0 90 > th dose independent rect. 10 1
490 93.60 temperature 15.0 90 > th dose dependent rect. 3 6
528 93.66 radiation 1.0 90 > th dose dependent rect. 10 1
600 93.76 atmosphere 1000.0 1440 > th dose independent rect. 11 1
603 93.77 atmosphere 1005.0 14400 > th dose independent rect. 5 1
610 93.78 wind 9.0 14400 > th dose dependent sin 10 NA
611 93.78 humidity 90.0 4320 > th dose dependent rect. 21 1
649 93.81 atmosphere 1000.0 1440 < th dose independent sin 7 NA
662 93.82 temperature 10.0 90 > th dose dependent rect. 11 23
668 93.84 atmosphere 1000.0 90 > th dose independent rect. 10 1
678 93.86 temperature 10.0 90 > th dose independent rect. 10 1
680 93.86 atmosphere 1015.0 90 < th dose independent rect. 10 1
685 93.86 temperature 10.0 90 > th dose independent rect. 11 23
687 93.87 wind 7.0 14400 > th dose independent rect. 6 1
690 93.88 atmosphere 1005.0 14400 < th dose independent rect. 4 2
698 93.90 precipitation 0.1 90 < th dose independent rect. 10 1
702 93.90 precipitation 0.1 90 < th dose dependent rect. 10 1
724 93.94 wind 1.0 90 > th dose independent rect. 9 18
746 93.98 wind 9.0 4320 > th dose independent sin 12 NA
749 93.98 wind 9.0 90 < th dose independent rect. 11 23
751 93.99 atmosphere 1000.0 1440 > th dose independent sin 7 NA
760 94.00 humidity 60.0 14400 < th dose independent rect. 17 17
763 94.02 atmosphere 1000.0 14400 < th dose independent rect. 19 1
783 94.05 atmosphere 1000.0 14400 > th dose independent rect. 19 1
786 94.06 wind 9.0 4320 < th dose independent sin 12 NA
802 94.08 atmosphere 995.0 14400 > th dose independent rect. 11 10
814 94.09 atmosphere 995.0 14400 > th dose independent rect. 7 14
869 94.17 wind 7.0 14400 < th dose independent rect. 6 1
871 94.17 atmosphere 1005.0 14400 > th dose independent rect. 3 6
884 94.19 humidity 50.0 90 > th dose independent rect. 10 1
888 94.19 atmosphere 995.0 270 > th dose dependent rect. 7 4
912 94.23 wind 9.0 90 < th dose independent rect. 10 1
917 94.23 temperature 10.0 10 > th dose dependent rect. 12 22
922 94.24 precipitation 0.1 270 < th dose independent rect. 11 10
924 94.24 precipitation 0.1 270 < th dose dependent rect. 11 10
930 94.25 temperature 30.0 270 < th dose independent rect. 21 14
932 94.25 atmosphere 1000.0 14400 < th dose dependent rect. 19 1
941 94.26 precipitation 0.1 14400 > th dose dependent rect. 20 7
951 94.27 atmosphere 1005.0 14400 > th dose independent rect. 3 9
952 94.27 atmosphere 1005.0 14400 < th dose independent rect. 3 9
958 94.28 temperature 30.0 90 < th dose independent rect. 9 4
988 94.29 temperature 20.0 90 > th dose independent rect. 3 6
995 94.30 humidity 90.0 4320 > th dose independent rect. 21 1