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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0290100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.06 (0.0198) R2 : 2.65e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00458 (0.0416) R2dN8 : 3.42e-05 R2N8 : 2.65e-05
σ : 0.372
deviance : 63.66
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
62.02 0.37 3.06 0.0443 0.0637 -0.174 -0.353 0.01 0.0056 3.46 1010 9 -- --
62.02 0.37 3.06 0.0436 0.064 -0.174 -0.353 -- 0.0055 3.47 1010 9 -- --
62.32 0.371 3.05 0.049 0.0769 -0.17 -- -0.011 0.00722 5.52 1010 9 -- --
62.32 0.37 3.05 0.0498 0.0768 -0.17 -- -- 0.00734 5.52 1010 9 -- --
62.63 0.371 3.06 0.0524 -- -0.179 -- -0.00355 0.00915 -- 1010 9 -- --
62.94 0.372 3.06 0.0376 0.0745 -- -0.365 -- 0.0056 4.02 -- -- -- --
63.19 0.372 3.05 0.0424 0.0898 -- -- -- 0.00756 6.13 -- -- -- --
62.63 0.37 3.06 0.0527 -- -0.179 -- -- 0.00919 -- 1010 9 -- --
62.39 0.37 3.06 -- 0.0778 -0.168 -- -- 0.00181 5.5 1010 8 -- --
63.61 0.373 3.06 0.045 -- -- -- -- 0.00957 -- -- -- -- --
63.24 0.372 3.05 -- 0.0905 -- -- -- 0.00284 6.1 -- -- -- --
62.7 0.37 3.06 -- -- -0.177 -- -- 0.00336 -- 1010 9 -- --
63.66 0.372 3.06 -- -- -- -- -- 0.00458 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 57.78 radiation 1.0 14400 < th dose dependent rect. 3 1
15 57.94 wind 9.0 1440 < th dose independent rect. 3 1
16 57.94 temperature 10.0 1440 > th dose independent rect. 3 1
19 57.94 temperature 30.0 1440 < th dose independent rect. 3 1
23 57.94 humidity 50.0 1440 > th dose independent rect. 3 1
32 57.94 atmosphere 995.0 1440 > th dose independent rect. 3 1
33 57.94 radiation 1.0 1440 < th dose independent rect. 3 1
53 57.94 temperature 10.0 1440 > th dose independent rect. 4 23
62 57.96 temperature 25.0 90 > th dose independent rect. 2 1
63 57.98 temperature 25.0 90 > th dose dependent rect. 2 1
64 57.99 atmosphere 1005.0 30 > th dose dependent rect. 2 1
67 58.01 wind 3.0 30 < th dose dependent rect. 2 1
68 58.02 wind 3.0 30 < th dose independent rect. 2 1
72 58.03 atmosphere 1005.0 30 > th dose independent rect. 2 1
73 58.03 atmosphere 995.0 30 > th dose independent rect. 3 23
83 58.05 humidity 90.0 30 > th dose independent rect. 2 1
86 58.06 temperature 10.0 30 > th dose independent rect. 2 1
88 58.06 temperature 30.0 30 < th dose independent rect. 2 1
89 58.06 humidity 50.0 30 > th dose independent rect. 2 1
92 58.06 atmosphere 995.0 30 > th dose independent rect. 2 1
94 58.06 atmosphere 1010.0 30 < th dose independent rect. 2 1
96 58.06 radiation 1.0 30 < th dose independent rect. 2 1
101 58.06 precipitation 0.1 30 < th dose independent rect. 2 1
102 58.06 temperature 10.0 30 > th dose independent rect. 3 23
103 58.06 humidity 50.0 30 > th dose dependent rect. 2 1
107 58.06 radiation 1.0 30 < th dose dependent rect. 2 1
112 58.06 precipitation 0.1 30 < th dose dependent rect. 2 1
119 58.12 atmosphere 1015.0 30 < th dose dependent rect. 2 1
120 58.14 wind 9.0 30 < th dose independent rect. 3 23
123 58.16 temperature 30.0 30 < th dose dependent rect. 2 1
125 58.18 precipitation 0.1 30 < th dose independent rect. 3 23
126 58.18 precipitation 0.1 30 < th dose dependent rect. 3 23
131 58.22 wind 1.0 30 > th dose independent rect. 2 1
190 59.09 radiation 10.0 10 > th dose independent rect. 6 1
216 59.09 radiation 10.0 10 > th dose dependent rect. 6 1
250 59.51 humidity 90.0 90 < th dose independent rect. 2 1
253 59.69 humidity 50.0 30 > th dose independent rect. 3 23
262 59.96 atmosphere 1010.0 10 < th dose independent rect. 3 23
266 60.03 temperature 10.0 30 > th dose dependent rect. 3 23
277 60.17 radiation 10.0 30 < th dose dependent rect. 3 23
305 60.24 wind 3.0 30 < th dose dependent rect. 6 1
310 60.30 radiation 10.0 30 < th dose independent rect. 3 23
311 60.30 atmosphere 1005.0 30 > th dose dependent rect. 2 5
312 60.31 temperature 30.0 30 < th dose independent rect. 3 23
313 60.33 atmosphere 1005.0 30 > th dose dependent rect. 6 1
318 60.42 wind 1.0 30 < th dose independent rect. 24 3
325 60.46 wind 3.0 10 < th dose dependent rect. 22 5
326 60.47 temperature 25.0 270 > th dose independent rect. 23 4
341 60.58 precipitation 0.1 720 < th dose independent rect. 3 16
342 60.58 humidity 80.0 30 > th dose dependent rect. 6 1
343 60.58 precipitation 0.1 720 < th dose dependent rect. 3 16
348 60.59 wind 1.0 10 < th dose independent rect. 6 21
356 60.63 temperature 20.0 30 > th dose dependent rect. 2 5
357 60.64 wind 1.0 10 < th dose independent rect. 14 13
360 60.64 wind 9.0 30 < th dose dependent rect. 3 23
374 60.69 temperature 25.0 270 > th dose dependent rect. 23 4
375 60.70 atmosphere 1015.0 720 < th dose independent rect. 3 8
379 60.72 precipitation 0.1 720 < th dose independent rect. 7 8
381 60.72 precipitation 0.1 720 < th dose dependent rect. 7 8
383 60.74 humidity 50.0 720 > th dose independent rect. 23 16
390 60.76 wind 9.0 720 < th dose independent rect. 3 8
391 60.76 humidity 50.0 720 > th dose independent rect. 7 8
399 60.79 precipitation 0.1 720 < th dose independent rect. 23 16
403 60.79 precipitation 0.1 720 < th dose dependent rect. 23 16
405 60.80 wind 3.0 30 < th dose dependent rect. 2 5
407 60.81 humidity 50.0 720 > th dose independent rect. 3 8
412 60.82 humidity 90.0 90 < th dose independent rect. 1 6
413 60.82 wind 9.0 720 < th dose independent rect. 19 8
415 60.82 temperature 30.0 30 < th dose dependent rect. 6 1
427 60.87 humidity 90.0 90 < th dose independent rect. 1 3
428 60.87 precipitation 0.1 720 < th dose independent rect. 19 8
430 60.87 precipitation 0.1 720 < th dose dependent rect. 19 8
437 60.90 precipitation 0.1 720 < th dose independent rect. 3 8
439 60.90 precipitation 0.1 720 < th dose dependent rect. 3 8
441 60.91 wind 9.0 30 < th dose independent rect. 7 23
447 60.92 temperature 10.0 720 > th dose independent rect. 3 8
448 60.92 atmosphere 995.0 720 > th dose independent rect. 3 8
449 60.92 temperature 10.0 720 > th dose independent rect. 11 16
455 60.94 temperature 10.0 720 > th dose independent rect. 15 8
456 60.94 temperature 10.0 720 > th dose independent rect. 23 16
457 60.94 temperature 25.0 270 > th dose dependent rect. 23 1
473 60.99 wind 3.0 30 < th dose independent rect. 6 1
475 60.99 temperature 10.0 720 > th dose independent rect. 7 8
476 60.99 atmosphere 995.0 720 > th dose independent rect. 7 8
477 60.99 atmosphere 1015.0 720 < th dose independent rect. 7 8
478 60.99 temperature 10.0 720 > th dose independent rect. 15 16
485 61.01 temperature 10.0 720 > th dose independent rect. 19 8
486 61.01 temperature 30.0 720 < th dose independent rect. 19 8
487 61.01 humidity 50.0 720 > th dose independent rect. 19 8
488 61.01 atmosphere 995.0 720 > th dose independent rect. 19 8
489 61.01 radiation 1.0 720 < th dose independent rect. 19 8
494 61.01 temperature 10.0 720 > th dose independent rect. 3 16
495 61.01 atmosphere 995.0 720 > th dose independent rect. 15 16
498 61.01 radiation 1.0 720 < th dose dependent rect. 19 8
507 61.03 atmosphere 1015.0 720 < th dose independent rect. 3 16
511 61.05 atmosphere 995.0 720 > th dose independent rect. 3 16
516 61.06 atmosphere 995.0 720 > th dose independent rect. 23 16
524 61.09 temperature 20.0 10 > th dose independent rect. 6 1
534 61.10 radiation 40.0 90 < th dose independent rect. 11 16
541 61.13 atmosphere 1010.0 10 < th dose independent rect. 3 8
544 61.14 wind 9.0 1440 < th dose independent rect. 7 1
545 61.14 temperature 10.0 1440 > th dose independent rect. 7 1
549 61.14 temperature 30.0 1440 < th dose independent rect. 7 1
553 61.14 humidity 50.0 1440 > th dose independent rect. 7 1
558 61.14 atmosphere 995.0 1440 > th dose independent rect. 7 1
559 61.14 atmosphere 1015.0 1440 < th dose independent rect. 7 1
561 61.14 temperature 10.0 1440 > th dose independent rect. 8 23
566 61.15 precipitation 0.1 720 < th dose independent rect. 15 8
570 61.15 precipitation 0.1 720 < th dose dependent rect. 15 8
571 61.16 humidity 80.0 30 > th dose independent rect. 6 1
572 61.16 atmosphere 1005.0 30 > th dose independent rect. 6 1
579 61.17 humidity 90.0 30 < th dose independent rect. 6 1
593 61.19 temperature 10.0 30 > th dose independent rect. 6 1
595 61.19 temperature 30.0 30 < th dose independent rect. 6 1
596 61.19 humidity 50.0 30 > th dose independent rect. 6 1
599 61.19 atmosphere 995.0 30 > th dose independent rect. 6 1
600 61.19 atmosphere 1015.0 30 < th dose independent rect. 6 1
601 61.19 radiation 20.0 30 < th dose independent rect. 6 1
604 61.19 precipitation 0.1 30 < th dose independent rect. 6 1
605 61.19 temperature 10.0 30 > th dose independent rect. 7 23
606 61.19 precipitation 0.1 30 < th dose dependent rect. 6 1
608 61.20 humidity 90.0 90 < th dose independent rect. 1 15
612 61.21 wind 1.0 30 > th dose independent rect. 6 1
616 61.21 atmosphere 1010.0 10 < th dose independent rect. 3 12
629 61.23 wind 1.0 10 < th dose independent rect. 2 5
631 61.23 atmosphere 1010.0 10 < th dose independent rect. 4 18
642 61.25 temperature 10.0 720 > th dose dependent rect. 3 1
649 61.25 wind 3.0 10 < th dose dependent rect. 6 21
664 61.28 atmosphere 995.0 720 > th dose independent rect. 15 8
674 61.29 radiation 20.0 10 < th dose dependent rect. 6 1
680 61.30 temperature 10.0 30 > th dose dependent rect. 6 1
683 61.31 atmosphere 1015.0 1440 < th dose independent rect. 3 1
690 61.31 atmosphere 995.0 720 > th dose independent rect. 11 16
710 61.32 radiation 40.0 90 < th dose dependent rect. 11 16
734 61.35 humidity 90.0 90 < th dose independent rect. 1 11
754 61.38 atmosphere 1010.0 10 < th dose independent rect. 4 16
799 61.41 wind 9.0 720 < th dose independent rect. 15 8
800 61.41 radiation 40.0 720 < th dose independent rect. 15 8
814 61.42 wind 7.0 90 < th dose independent rect. 3 14
823 61.42 temperature 20.0 10 < th dose dependent rect. 3 9
829 61.42 radiation 40.0 90 < th dose dependent rect. 14 13
853 61.45 wind 9.0 720 < th dose independent rect. 23 16
861 61.46 atmosphere 1010.0 10 < th dose independent rect. 4 14
862 61.46 precipitation 0.1 720 < th dose independent rect. 11 16
873 61.46 precipitation 0.1 720 < th dose dependent rect. 11 16
908 61.48 wind 7.0 90 < th dose independent rect. 3 12
910 61.48 wind 1.0 10 > th dose independent rect. 16 14
923 61.48 radiation 40.0 30 < th dose dependent rect. 3 8
925 61.49 humidity 90.0 10 > th dose independent rect. 24 3
926 61.49 temperature 20.0 10 > th dose independent rect. 2 5
928 61.49 wind 1.0 10 > th dose independent rect. 12 18
937 61.50 atmosphere 1000.0 30 > th dose independent rect. 3 8
944 61.51 wind 1.0 10 > th dose independent rect. 12 23
958 61.52 wind 1.0 10 > th dose independent rect. 7 23
961 61.52 temperature 25.0 720 > th dose dependent rect. 3 5
989 61.54 humidity 50.0 30 > th dose dependent rect. 3 8