FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0286100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Zinc-finger protein KNUCKLES.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.83 (0.0199) R2 : 1.11e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00297 (0.0419) R2dN8 : 1.43e-05 R2N8 : 1.11e-05
σ : 0.374
deviance : 64.35
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
58.53 0.356 1.9 -2.02 0.083 107 -0.104 226 0.00393 7.62 15 90 -- --
63.08 0.373 2.83 -0.139 0.101 0.0726 -0.193 -- -0.0142 8.89 15 90 -- --
58.56 0.356 1.9 -2.02 0.083 107 -- 226 0.00393 7.62 15 90 -- --
60.69 0.365 2.83 -0.0722 0.0992 -0.734 -- -- 0.00464 9.05 16.8 23 -- --
58.93 0.358 1.89 -2.04 -- 107 -- 226 0.00536 -- 15.01 93 -- --
63.09 0.372 2.83 -0.136 0.102 -- -0.199 -- -0.0134 8.93 -- -- -- --
63.22 0.372 2.83 -0.142 0.102 -- -- -- -0.0134 9.16 -- -- -- --
61.26 0.366 2.83 -0.072 -- -0.739 -- -- 0.00534 -- 16.8 23 -- --
60.82 0.365 2.83 -- 0.099 -0.771 -- -- 0.0132 9.1 16.66 35 -- --
63.82 0.373 2.83 -0.143 -- -- -- -- -0.0128 -- -- -- -- --
63.75 0.374 2.83 -- 0.102 -- -- -- 0.00247 9.26 -- -- -- --
61.39 0.366 2.83 -- -- -0.776 -- -- 0.0138 -- 16.62 38 -- --
64.35 0.374 2.83 -- -- -- -- -- 0.00297 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 55.39 radiation 1.0 90 < th dose independent rect. 8 5
2 55.39 radiation 1.0 90 < th dose dependent rect. 8 5
15 57.25 temperature 20.0 720 < th dose dependent rect. 7 5
18 57.28 radiation 1.0 720 < th dose independent rect. 9 1
19 57.28 radiation 1.0 720 < th dose dependent rect. 9 1
22 57.35 atmosphere 1015.0 720 < th dose independent rect. 24 15
26 57.41 temperature 20.0 270 < th dose dependent rect. 7 9
41 57.54 humidity 90.0 270 > th dose dependent rect. 11 2
43 57.57 humidity 90.0 270 > th dose independent rect. 11 2
44 57.58 atmosphere 1015.0 720 < th dose independent rect. 24 8
45 57.60 temperature 15.0 90 > th dose independent rect. 3 10
48 57.64 humidity 90.0 1440 > th dose independent rect. 11 2
50 57.65 wind 9.0 30 < th dose independent rect. 3 23
54 57.66 humidity 90.0 1440 > th dose dependent rect. 11 2
77 57.95 temperature 15.0 720 > th dose independent rect. 3 9
78 57.97 wind 7.0 10 > th dose independent rect. 10 4
82 57.98 wind 7.0 10 > th dose independent rect. 10 6
83 57.98 wind 7.0 10 < th dose independent rect. 3 10
99 58.04 humidity 80.0 90 > th dose dependent rect. 9 6
114 58.16 atmosphere 1015.0 720 < th dose independent rect. 24 17
125 58.19 temperature 15.0 720 > th dose independent rect. 5 7
130 58.20 humidity 90.0 1440 < th dose independent rect. 11 2
147 58.24 wind 7.0 90 < th dose independent rect. 3 10
182 58.33 wind 1.0 720 < th dose dependent rect. 7 3
185 58.34 wind 7.0 10 > th dose independent sin 2 NA
186 58.34 humidity 80.0 90 > th dose independent rect. 9 6
194 58.37 wind 7.0 10 < th dose independent sin 2 NA
200 58.37 atmosphere 1015.0 720 < th dose independent rect. 24 21
203 58.38 atmosphere 1015.0 720 < th dose independent sin 4 NA
204 58.38 humidity 80.0 270 > th dose independent rect. 9 4
227 58.42 atmosphere 1015.0 1440 < th dose independent rect. 12 1
228 58.42 atmosphere 1015.0 1440 < th dose independent rect. 17 4
230 58.43 wind 1.0 720 < th dose independent rect. 7 3
231 58.43 atmosphere 1015.0 1440 > th dose independent rect. 18 3
234 58.43 atmosphere 1015.0 1440 > th dose independent rect. 14 8
235 58.43 atmosphere 1015.0 1440 < th dose independent rect. 12 10
236 58.44 temperature 15.0 90 > th dose independent sin 1 NA
237 58.44 temperature 15.0 4320 > th dose independent rect. 12 1
256 58.44 atmosphere 1015.0 720 < th dose independent rect. 24 23
257 58.44 temperature 15.0 4320 < th dose dependent rect. 4 1
259 58.44 atmosphere 1015.0 1440 > th dose dependent rect. 20 2
264 58.44 wind 7.0 720 > th dose dependent rect. 2 6
268 58.45 atmosphere 1015.0 720 > th dose independent sin 1 NA
269 58.45 atmosphere 1015.0 720 > th dose independent sin 4 NA
277 58.45 atmosphere 1015.0 720 > th dose independent rect. 24 21
278 58.45 atmosphere 1015.0 720 > th dose dependent sin 1 NA
279 58.45 atmosphere 1015.0 720 > th dose dependent sin 4 NA
281 58.45 wind 7.0 720 > th dose dependent rect. 4 4
283 58.45 atmosphere 1015.0 720 > th dose dependent rect. 23 4
293 58.45 temperature 15.0 4320 < th dose dependent rect. 3 8
324 58.46 wind 7.0 720 > th dose dependent rect. 7 1
330 58.46 temperature 15.0 4320 < th dose dependent rect. 11 2
363 58.46 atmosphere 1015.0 720 > th dose dependent rect. 1 20
371 58.47 atmosphere 1015.0 720 > th dose independent rect. 23 5
372 58.47 wind 7.0 720 > th dose independent rect. 2 6
408 58.47 temperature 15.0 4320 < th dose dependent rect. 10 7
435 58.48 atmosphere 1015.0 1440 < th dose independent rect. 18 1
436 58.48 wind 7.0 720 > th dose independent rect. 4 4
446 58.48 temperature 20.0 90 < th dose dependent rect. 12 4
449 58.48 temperature 20.0 10 < th dose dependent rect. 12 5
475 58.49 temperature 15.0 90 > th dose independent sin 5 NA
476 58.49 wind 7.0 720 > th dose independent rect. 7 1
528 58.50 atmosphere 1015.0 1440 > th dose independent sin 19 NA
530 58.50 atmosphere 1015.0 1440 < th dose independent sin 19 NA
533 58.50 temperature 20.0 90 < th dose independent rect. 12 4
539 58.50 temperature 15.0 4320 < th dose dependent sin 2 NA
540 58.50 atmosphere 1015.0 1440 > th dose dependent sin 18 NA
580 58.51 temperature 15.0 4320 < th dose independent rect. 11 2
599 58.51 atmosphere 1015.0 1440 < th dose independent rect. 5 18
608 58.51 temperature 15.0 4320 < th dose dependent rect. 14 2
653 58.52 precipitation 0.1 270 > th dose independent rect. 9 1
681 58.52 atmosphere 1015.0 1440 < th dose independent rect. 7 15
704 58.52 precipitation 0.1 270 > th dose dependent rect. 9 1
723 58.52 wind 9.0 90 > th dose dependent rect. 11 5
756 58.52 wind 9.0 720 > th dose dependent rect. 21 13
766 58.53 temperature 15.0 90 > th dose independent no NA NA
768 58.53 temperature 15.0 90 < th dose independent sin 7 NA
816 58.53 temperature 15.0 90 < th dose independent no NA NA
819 58.53 temperature 15.0 720 < th dose independent rect. 2 1
821 58.53 temperature 15.0 1440 < th dose independent rect. 5 1
823 58.53 temperature 15.0 1440 < th dose independent rect. 9 1
824 58.53 temperature 20.0 270 < th dose independent rect. 10 1
827 58.53 temperature 20.0 270 < th dose independent rect. 12 1
829 58.53 atmosphere 1015.0 1440 > th dose independent rect. 1 1
832 58.53 atmosphere 1015.0 1440 > th dose independent rect. 14 1
843 58.53 temperature 20.0 10 < th dose independent rect. 12 2
868 58.53 humidity 90.0 10 > th dose independent rect. 9 3