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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0280700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Resistance protein candidate (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.46 (0.0511) R2 : 0.566
β1 : -3.05 (0.193) R2dD : 0.298 R2D : 0.161
β2 : 0.555 (0.118) R2dC : 0.0211 R2C : -0.0623
β3 : 8.04 (0.609) R2dE : 0.619 R2E : -0.0706
β4 : -3.93 (0.48) R2dD*C : 0.0641 R2D*C : -0.0322
β5 : 17.6 (1.44) R2dD*E : 0.549 R2D*E : -0.796
γ1 : -0.77 (0.107) R2dN8 : 0.072 R2N8 : 0.000811
σ : 0.906
deviance : 372.09
__
_____
C
peak time of C : 2.6
E
wheather : temperature
threshold : 24.81
memory length : 1397
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 11
open length of G : 1.45

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
372.09 0.906 4.46 -3.05 0.555 8.04 -3.93 17.6 -0.77 2.6 24.81 1397 11 1.45
433.64 0.97 4.2 -2.32 0.464 2.85 -3.57 -- -0.468 2.99 30.78 1306 10.7 4.37
421.03 0.956 4.46 -2.9 0.549 8.46 -- 18 -0.792 2.79 24.46 1419 11 1.57
458.96 0.998 4.19 -2.35 0.246 3.55 -- -- -0.495 8.89 30.63 1058 11.8 8.08
436.5 0.973 4.46 -2.67 -- 9.32 -- 19.8 -0.698 -- 24.28 1417 11 1.5
519.52 1.07 4.3 -3.16 0.553 -- -3.9 -- -0.919 2.66 -- -- -- --
572.8 1.12 4.29 -3.06 0.539 -- -- -- -0.895 2.21 -- -- -- --
461.13 1 4.2 -2.39 -- 3.44 -- -- -0.502 -- 30.45 1080 12 8.3
585.85 1.13 4.1 -- 0.334 4.4 -- -- -0.078 6.95 30.73 1217 10.7 6.5
590.1 1.14 4.28 -3.04 -- -- -- -- -0.882 -- -- -- -- --
819.38 1.34 4.21 -- 0.481 -- -- -- -0.555 2.08 -- -- -- --
585.63 1.13 4.07 -- -- 4.05 -- -- 0.0694 -- 29.56 2269 12 12.2
833.25 1.35 4.21 -- -- -- -- -- -0.545 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 375.35 temperature 20.0 4320 > th dose independent rect. 21 1
2 376.38 temperature 20.0 4320 < th dose independent rect. 21 1
3 381.49 temperature 20.0 4320 > th dose independent rect. 18 5
5 384.67 wind 5.0 4320 > th dose independent rect. 20 1
7 384.94 wind 5.0 4320 < th dose independent rect. 20 1
8 385.08 temperature 25.0 1440 < th dose dependent rect. 11 1
18 390.93 temperature 20.0 4320 < th dose independent rect. 18 5
31 395.47 wind 9.0 4320 < th dose independent rect. 20 1
37 396.65 wind 5.0 4320 > th dose dependent rect. 20 1
38 396.67 temperature 20.0 4320 > th dose independent rect. 18 1
47 398.30 wind 9.0 4320 > th dose dependent rect. 19 2
56 399.06 temperature 25.0 720 < th dose dependent rect. 9 14
60 399.38 temperature 25.0 720 < th dose dependent sin 20 NA
62 399.51 wind 3.0 43200 > th dose dependent rect. 13 1
64 399.57 humidity 90.0 1440 < th dose dependent rect. 3 1
65 399.61 humidity 80.0 1440 < th dose independent rect. 23 1
73 400.20 wind 5.0 43200 > th dose independent rect. 13 1
74 400.27 wind 9.0 4320 > th dose dependent rect. 19 9
76 400.42 wind 9.0 4320 > th dose independent rect. 19 2
88 401.37 temperature 20.0 4320 < th dose independent rect. 18 1
125 403.04 atmosphere 995.0 14400 > th dose independent rect. 18 3
128 403.19 wind 5.0 43200 < th dose independent rect. 13 1
138 403.82 humidity 90.0 1440 < th dose dependent rect. 23 7
142 404.02 wind 9.0 4320 > th dose independent rect. 19 9
143 404.05 wind 5.0 43200 < th dose independent rect. 12 3
149 404.46 wind 7.0 4320 < th dose independent rect. 19 8
196 406.95 precipitation 0.1 14400 > th dose dependent rect. 20 2
211 408.08 humidity 70.0 1440 > th dose dependent rect. 3 1
212 408.09 atmosphere 995.0 14400 < th dose independent rect. 16 2
217 408.10 atmosphere 995.0 14400 < th dose dependent rect. 16 1
256 409.09 humidity 80.0 1440 < th dose dependent rect. 23 3
267 409.84 humidity 80.0 1440 < th dose dependent rect. 23 1
268 409.91 humidity 80.0 1440 > th dose independent rect. 23 3
270 409.93 atmosphere 995.0 14400 > th dose independent rect. 16 1
283 410.53 atmosphere 995.0 14400 > th dose independent rect. 18 1
289 410.74 atmosphere 995.0 14400 > th dose independent rect. 13 8
292 410.81 humidity 80.0 1440 > th dose independent rect. 23 1
321 410.88 humidity 80.0 1440 > th dose independent rect. 22 5
323 410.99 atmosphere 995.0 14400 > th dose independent rect. 8 13
331 411.23 atmosphere 995.0 14400 > th dose independent rect. 10 11
366 411.72 radiation 20.0 43200 > th dose independent rect. 6 1
381 411.80 temperature 25.0 720 < th dose independent sin 20 NA
393 411.88 humidity 90.0 1440 < th dose dependent rect. 2 4
484 413.05 temperature 25.0 720 < th dose independent rect. 7 17
487 413.09 atmosphere 995.0 14400 > th dose independent rect. 4 11
500 413.24 atmosphere 995.0 14400 < th dose independent rect. 3 13
512 413.40 atmosphere 995.0 14400 > th dose independent rect. 1 15
522 413.49 precipitation 0.1 14400 > th dose dependent rect. 20 5
525 413.57 humidity 50.0 1440 > th dose dependent rect. 2 4
551 413.93 atmosphere 995.0 14400 > th dose independent rect. 19 21
553 413.94 temperature 25.0 720 < th dose independent rect. 9 15
564 414.07 wind 7.0 4320 < th dose independent rect. 8 1
588 414.32 radiation 1.0 14400 < th dose dependent rect. 1 1
651 415.17 atmosphere 995.0 14400 > th dose independent sin 4 NA
686 415.71 atmosphere 995.0 14400 < th dose dependent sin 1 NA
711 415.97 radiation 20.0 43200 < th dose independent rect. 1 7
717 416.00 radiation 20.0 43200 < th dose independent rect. 4 4
730 416.03 radiation 20.0 43200 < th dose independent rect. 21 11
732 416.03 radiation 20.0 43200 < th dose independent rect. 18 14
735 416.05 atmosphere 995.0 14400 < th dose independent sin 4 NA
757 416.27 wind 7.0 1440 > th dose independent rect. 8 1
818 416.76 atmosphere 995.0 14400 < th dose dependent rect. 14 10
828 416.78 atmosphere 995.0 14400 < th dose dependent sin 20 NA
829 416.78 atmosphere 995.0 14400 < th dose dependent rect. 4 19
885 417.15 temperature 20.0 1440 > th dose dependent rect. 21 1
913 417.49 humidity 50.0 1440 > th dose dependent rect. 5 1
937 417.79 atmosphere 995.0 14400 > th dose independent rect. 1 23
951 417.90 atmosphere 995.0 14400 > th dose independent rect. 12 23
952 417.90 atmosphere 995.0 14400 > th dose independent rect. 14 23
958 417.91 atmosphere 995.0 14400 > th dose independent no NA NA
961 417.91 atmosphere 995.0 14400 > th dose independent rect. 7 23
963 417.91 atmosphere 995.0 14400 > th dose independent rect. 10 23