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Os05g0279900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Polygalacturonase A (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.68 (0.0457) R2 : 0.621
β1 : 1.4 (0.174) R2dD : 0.064 R2D : 0.017
β2 : -- (--) R2dC : -- R2C : --
β3 : -3.57 (0.145) R2dE : 0.509 R2E : 0.478
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 4.84 (0.708) R2dD*E : 0.0418 R2D*E : 0.00163
γ1 : -0.639 (0.0975) R2dN8 : 0.0462 R2N8 : 0.072
σ : 0.845
deviance : 329.04
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 5.038
memory length : 255
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 9.7
open length of G : 17.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
327.72 0.851 7.68 1.51 0.361 -3.88 0.00587 4.83 -0.585 18 6.742 245 9.82 17.3
337.9 0.856 7.71 1.26 0.15 -3.8 2.41 -- -0.653 19.8 4.541 270 9.37 17.8
327.21 0.842 7.68 1.5 0.332 -3.79 -- 4.95 -0.593 17.7 5.87 241 9.83 17.3
357.39 0.88 7.74 1.12 0.405 -3.84 -- -- -0.697 17.6 3.888 264 9.5 17.3
329.04 0.845 7.68 1.4 -- -3.57 -- 4.84 -0.639 -- 5.038 255 9.7 17.4
481.81 1.03 7.7 0.727 2.3 -- -2.57 -- -0.891 7.78 -- -- -- --
500.8 1.05 7.7 0.661 2.3 -- -- -- -0.888 7.8 -- -- -- --
360.5 0.884 7.73 1.05 -- -3.52 -- -- -0.744 -- 2.226 251 9.55 17.7
387.08 0.916 7.76 -- 0.278 -3.56 -- -- -0.858 17.2 2.636 256 9.56 17.3
786.39 1.31 7.76 0.689 -- -- -- -- -0.855 -- -- -- -- --
512.33 1.06 7.72 -- 2.3 -- -- -- -0.961 7.78 -- -- -- --
387.69 0.917 7.77 -- -- -3.3 -- -- -0.88 -- 0.4314 249 9.58 17.5
798.91 1.32 7.78 -- -- -- -- -- -0.932 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 337.10 temperature 10.0 270 > th dose dependent rect. 9 18
2 340.61 temperature 10.0 270 > th dose dependent rect. 10 16
8 348.75 temperature 10.0 10 > th dose dependent rect. 12 17
24 363.11 temperature 10.0 270 > th dose dependent rect. 21 7
38 367.91 temperature 30.0 270 < th dose independent rect. 4 16
43 369.09 temperature 30.0 270 < th dose independent rect. 15 18
47 369.69 temperature 10.0 270 > th dose dependent rect. 22 17
48 370.08 temperature 10.0 270 > th dose dependent rect. 9 6
56 372.05 humidity 50.0 270 > th dose independent rect. 23 15
58 372.19 radiation 40.0 270 < th dose independent rect. 14 9
61 372.37 temperature 30.0 270 < th dose independent rect. 3 7
66 372.71 humidity 50.0 270 > th dose independent rect. 15 18
68 373.32 radiation 1.0 90 < th dose independent rect. 23 15
74 373.92 wind 9.0 270 < th dose independent rect. 23 15
76 374.04 temperature 30.0 270 < th dose independent rect. 14 20
79 374.39 precipitation 0.1 270 < th dose independent rect. 3 7
80 374.39 precipitation 0.1 270 < th dose dependent rect. 3 7
82 374.64 temperature 10.0 270 > th dose independent rect. 14 9
83 374.64 temperature 10.0 270 > th dose independent rect. 23 15
84 374.64 atmosphere 995.0 270 > th dose independent rect. 23 15
86 374.89 temperature 30.0 270 < th dose independent rect. 14 8
87 374.90 humidity 50.0 270 > th dose independent rect. 14 9
88 374.90 radiation 1.0 90 < th dose dependent rect. 23 15
95 375.74 temperature 10.0 90 > th dose dependent rect. 23 6
97 375.91 wind 9.0 270 < th dose independent rect. 10 17
105 376.66 radiation 1.0 90 < th dose independent rect. 23 10
110 376.84 precipitation 0.1 270 < th dose independent rect. 14 9
111 376.84 precipitation 0.1 270 < th dose dependent rect. 14 9
113 377.20 temperature 10.0 270 > th dose independent rect. 3 7
114 377.20 atmosphere 995.0 270 > th dose independent rect. 3 7
115 377.20 atmosphere 1015.0 270 < th dose independent rect. 3 7
116 377.20 temperature 10.0 270 > th dose independent rect. 10 17
119 377.39 humidity 50.0 270 > th dose independent rect. 3 7
120 377.45 wind 9.0 270 < th dose independent rect. 3 7
123 377.73 precipitation 0.1 270 < th dose independent rect. 10 17
124 377.73 precipitation 0.1 270 < th dose dependent rect. 10 17
126 377.93 radiation 1.0 90 > th dose independent sin 8 NA
129 377.95 radiation 1.0 90 < th dose independent sin 8 NA
130 378.11 precipitation 0.1 270 < th dose independent rect. 23 15
131 378.11 precipitation 0.1 270 < th dose dependent rect. 23 15
134 378.16 wind 1.0 270 > th dose independent rect. 14 9
136 378.23 radiation 1.0 90 < th dose dependent rect. 23 9
144 378.55 radiation 1.0 90 < th dose dependent sin 8 NA
154 379.40 wind 9.0 270 < th dose independent rect. 14 9
162 380.43 radiation 1.0 10 > th dose independent rect. 5 7
174 380.50 atmosphere 995.0 270 > th dose independent rect. 14 9
176 380.71 temperature 15.0 10 > th dose dependent rect. 23 6
193 381.38 atmosphere 1015.0 270 < th dose independent rect. 23 15
210 381.93 radiation 1.0 90 > th dose independent rect. 18 17
214 382.22 humidity 50.0 270 > th dose independent rect. 9 6
215 382.24 radiation 1.0 90 > th dose independent rect. 4 7
238 382.88 precipitation 0.1 270 < th dose independent rect. 16 17
239 382.88 precipitation 0.1 270 < th dose dependent rect. 16 17
249 383.28 wind 9.0 270 < th dose independent rect. 9 7
255 383.93 precipitation 0.1 270 < th dose independent rect. 4 17
256 383.93 precipitation 0.1 270 < th dose dependent rect. 4 17
258 384.02 wind 7.0 270 < th dose independent rect. 21 7
265 384.18 atmosphere 1015.0 270 < th dose independent rect. 4 17
271 384.24 precipitation 0.1 270 < th dose independent rect. 9 7
282 384.24 precipitation 0.1 270 < th dose dependent rect. 9 7
290 384.31 radiation 1.0 270 > th dose independent rect. 9 7
294 384.37 temperature 10.0 270 > th dose independent rect. 21 7
295 384.37 temperature 30.0 270 < th dose independent rect. 21 7
296 384.37 humidity 50.0 270 > th dose independent rect. 21 7
299 384.37 atmosphere 995.0 270 > th dose independent rect. 21 7
300 384.37 radiation 1.0 270 < th dose independent rect. 21 7
305 384.37 temperature 10.0 270 > th dose independent rect. 4 17
306 384.37 radiation 1.0 270 < th dose dependent rect. 21 7
323 384.77 temperature 10.0 270 > th dose independent rect. 9 7
324 384.77 atmosphere 1015.0 270 < th dose independent rect. 9 7
325 384.77 temperature 10.0 270 > th dose independent rect. 16 17
346 385.72 precipitation 0.1 270 < th dose independent rect. 21 7
347 385.72 precipitation 0.1 270 < th dose dependent rect. 21 7
353 385.80 wind 9.0 270 < th dose independent rect. 16 17
356 385.83 humidity 50.0 270 > th dose independent rect. 14 20
380 386.55 atmosphere 995.0 270 > th dose independent rect. 16 17
390 386.94 wind 1.0 270 > th dose independent rect. 9 7
400 387.26 atmosphere 1015.0 270 < th dose independent rect. 14 8
417 387.65 atmosphere 995.0 270 > th dose independent rect. 10 17
422 387.81 wind 9.0 270 < th dose dependent rect. 21 7
425 387.87 temperature 15.0 270 > th dose dependent rect. 23 3
426 387.93 precipitation 0.1 10 < th dose independent rect. 5 7
427 387.93 wind 9.0 10 < th dose independent rect. 12 17
428 387.93 atmosphere 995.0 270 > th dose independent rect. 4 17
429 387.93 precipitation 0.1 10 < th dose dependent rect. 5 7
436 388.13 atmosphere 995.0 270 > th dose independent rect. 9 6
466 388.92 temperature 10.0 10 > th dose independent rect. 5 7
468 388.92 atmosphere 995.0 10 > th dose independent rect. 5 7
469 388.92 atmosphere 1015.0 10 < th dose independent rect. 5 7
470 388.92 temperature 10.0 10 > th dose independent rect. 12 17
472 389.06 wind 9.0 10 < th dose independent rect. 5 7
483 389.24 wind 9.0 270 < th dose independent rect. 4 17
495 389.49 humidity 50.0 270 > th dose independent rect. 4 16
528 390.18 temperature 20.0 90 > th dose independent rect. 23 6
530 390.23 precipitation 0.1 10 < th dose independent rect. 12 17
531 390.23 precipitation 0.1 10 < th dose dependent rect. 12 17
534 390.26 radiation 40.0 270 < th dose independent rect. 16 17
610 391.45 humidity 80.0 90 > th dose independent rect. 23 6
615 391.57 radiation 1.0 270 < th dose dependent rect. 20 12
620 391.71 temperature 20.0 10 > th dose independent rect. 12 17
622 391.75 radiation 40.0 270 < th dose independent rect. 4 5
660 392.56 temperature 30.0 10 < th dose independent rect. 5 7
690 393.08 wind 7.0 90 < th dose independent rect. 23 6
707 393.41 wind 9.0 270 < th dose dependent rect. 10 17
719 393.56 temperature 30.0 90 < th dose independent rect. 23 6
720 393.56 humidity 50.0 90 > th dose independent rect. 23 6
723 393.56 atmosphere 995.0 90 > th dose independent rect. 23 6
745 393.72 humidity 50.0 90 > th dose dependent rect. 23 6
767 393.99 humidity 50.0 270 > th dose dependent rect. 21 7
768 394.03 wind 9.0 90 < th dose dependent rect. 23 6
800 394.48 temperature 20.0 10 > th dose independent rect. 24 5
813 394.64 precipitation 0.1 90 < th dose independent rect. 23 6
814 394.64 precipitation 0.1 90 < th dose dependent rect. 23 6
885 395.59 humidity 50.0 10 > th dose independent rect. 5 7
886 395.59 wind 9.0 270 < th dose dependent rect. 4 5
921 396.03 radiation 40.0 270 < th dose dependent rect. 14 8
941 396.21 temperature 10.0 270 > th dose dependent rect. 4 5
954 396.46 atmosphere 995.0 10 > th dose independent rect. 12 17
960 396.50 temperature 30.0 90 < th dose dependent rect. 15 8
961 396.53 temperature 20.0 270 > th dose independent rect. 23 3
998 397.21 humidity 50.0 270 > th dose dependent rect. 4 5