Os05g0277000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Expansin Os-EXPA3.
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Os05g0277000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Expansin Os-EXPA3.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 131.82 | 0.539 | 4.12 | 0.636 | 0.294 | 1.27 | 0.377 | -0.656 | -0.196 | 9.78 | 25.1 | 717 | -- | -- |
| 132.42 | 0.536 | 4.13 | 0.575 | 0.288 | 1.37 | 0.312 | -- | -0.198 | 9.89 | 24.94 | 722 | -- | -- |
| 132.03 | 0.535 | 4.14 | 0.593 | 0.335 | 1.33 | -- | -0.293 | -0.23 | 10.5 | 24.42 | 569 | -- | -- |
| 132.12 | 0.535 | 4.14 | 0.521 | 0.351 | 1.36 | -- | -- | -0.241 | 10.5 | 24.12 | 546 | -- | -- |
| 136.01 | 0.543 | 4.12 | 0.686 | -- | 1.42 | -- | -0.603 | -0.145 | -- | 26.6 | 754 | -- | -- |
| 158.27 | 0.59 | 4.19 | 0.158 | 0.48 | -- | 0.171 | -- | -0.497 | 9.93 | -- | -- | -- | -- |
| 158.38 | 0.589 | 4.19 | 0.164 | 0.479 | -- | -- | -- | -0.497 | 9.96 | -- | -- | -- | -- |
| 136.4 | 0.544 | 4.13 | 0.577 | -- | 1.46 | -- | -- | -0.172 | -- | 26.19 | 754 | -- | -- |
| 138.44 | 0.548 | 4.16 | -- | 0.384 | 1.14 | -- | -- | -0.334 | 10.5 | 24.09 | 491 | -- | -- |
| 172.18 | 0.613 | 4.21 | 0.159 | -- | -- | -- | -- | -0.497 | -- | -- | -- | -- | -- |
| 159.09 | 0.59 | 4.2 | -- | 0.479 | -- | -- | -- | -0.515 | 9.93 | -- | -- | -- | -- |
| 144.18 | 0.559 | 4.16 | -- | -- | 1.23 | -- | -- | -0.279 | -- | 26.23 | 737 | -- | -- |
| 172.84 | 0.614 | 4.21 | -- | -- | -- | -- | -- | -0.514 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 126.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 17 |
| 8 | 127.40 | temperature | 20 | 720 | > th | dose dependent | sin | 10 | NA |
| 19 | 127.81 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 14 |
| 36 | 128.46 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 66 | 129.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 7 |
| 104 | 129.64 | wind | 5 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 119 | 129.82 | wind | 5 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 121 | 129.85 | wind | 3 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 168 | 130.37 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 172 | 130.42 | wind | 5 | 43200 | > th | dose independent | rect. | 16 | 8 |
| 194 | 130.57 | wind | 5 | 43200 | < th | dose independent | rect. | 16 | 8 |
| 213 | 130.73 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 215 | 130.77 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 9 |
| 227 | 130.82 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 229 | 130.84 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 244 | 130.93 | wind | 3 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 255 | 131.00 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 274 | 131.11 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 290 | 131.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 302 | 131.23 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 13 |
| 313 | 131.27 | wind | 5 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 324 | 131.33 | wind | 5 | 43200 | > th | dose independent | sin | 15 | NA |
| 358 | 131.42 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 367 | 131.44 | wind | 5 | 43200 | < th | dose independent | sin | 15 | NA |
| 433 | 131.67 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 467 | 131.76 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 474 | 131.78 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 493 | 131.83 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 512 | 131.88 | wind | 3 | 43200 | > th | dose dependent | rect. | 17 | 6 |
| 537 | 131.95 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 557 | 131.98 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 584 | 132.08 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 606 | 132.16 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 607 | 132.17 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 9 |
| 651 | 132.25 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 13 |
| 688 | 132.31 | humidity | 80 | 43200 | > th | dose independent | rect. | 8 | 5 |
| 726 | 132.38 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 11 |
| 727 | 132.39 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 783 | 132.50 | humidity | 80 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 806 | 132.53 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 18 |
| 832 | 132.58 | temperature | 15 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 940 | 132.76 | humidity | 80 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 941 | 132.76 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 978 | 132.82 | wind | 3 | 43200 | > th | dose dependent | sin | 16 | NA |
| 996 | 132.85 | humidity | 90 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 998 | 132.85 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 23 |