Os05g0273000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0273000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71.61 | 0.398 | 3.1 | -0.426 | 0.187 | 0.852 | -0.0209 | -7.01 | -0.0478 | 9.02 | 30.7 | 26 | -- | -- |
| 76.11 | 0.409 | 3.05 | 0.0099 | 0.198 | 0.162 | -0.0507 | -- | -0.0508 | 8.99 | 30.7 | 26 | -- | -- |
| 71.57 | 0.397 | 3.09 | -0.411 | 0.187 | 0.856 | -- | -7.06 | -0.0481 | 9.01 | 30.7 | 19 | -- | -- |
| 76.01 | 0.409 | 3.05 | 0.0175 | 0.194 | 0.876 | -- | -- | -0.06 | 9.4 | 34.6 | 3 | -- | -- |
| 73.56 | 0.399 | 3.1 | -0.43 | -- | 0.871 | -- | -7.27 | -0.0468 | -- | 30.71 | 14 | -- | -- |
| 76.75 | 0.411 | 3.05 | 0.0255 | 0.195 | -- | -0.0789 | -- | -0.0615 | 9.61 | -- | -- | -- | -- |
| 76.77 | 0.41 | 3.05 | 0.0224 | 0.196 | -- | -- | -- | -0.0617 | 9.54 | -- | -- | -- | -- |
| 78.23 | 0.414 | 3.06 | 0.0162 | -- | 0.906 | -- | -- | -0.0592 | -- | 34.6 | 3 | -- | -- |
| 76.02 | 0.408 | 3.05 | -- | 0.194 | 0.879 | -- | -- | -0.0619 | 9.39 | 34.62 | 3 | -- | -- |
| 79.04 | 0.415 | 3.06 | 0.021 | -- | -- | -- | -- | -0.0612 | -- | -- | -- | -- | -- |
| 76.79 | 0.41 | 3.05 | -- | 0.196 | -- | -- | -- | -0.0642 | 9.53 | -- | -- | -- | -- |
| 78.23 | 0.413 | 3.06 | -- | -- | 0.908 | -- | -- | -0.061 | -- | 34.6 | 3 | -- | -- |
| 79.06 | 0.415 | 3.06 | -- | -- | -- | -- | -- | -0.0636 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.99 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 5 | 1 |
| 8 | 59.99 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 84 | 69.13 | wind | 1 | 30 | < th | dose dependent | rect. | 5 | 1 |
| 91 | 69.28 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 2 | 5 |
| 143 | 70.69 | wind | 1 | 90 | < th | dose independent | rect. | 5 | 1 |
| 148 | 70.82 | temperature | 30 | 10 | > th | dose dependent | rect. | 11 | 1 |
| 158 | 71.03 | temperature | 30 | 10 | > th | dose independent | rect. | 11 | 1 |
| 160 | 71.06 | temperature | 30 | 10 | > th | dose dependent | rect. | 17 | 20 |
| 200 | 71.22 | temperature | 30 | 90 | > th | dose independent | rect. | 11 | 1 |
| 297 | 71.73 | wind | 1 | 270 | < th | dose dependent | rect. | 3 | 1 |
| 342 | 71.98 | temperature | 30 | 10 | > th | dose dependent | sin | 9 | NA |
| 421 | 72.41 | temperature | 30 | 720 | > th | dose independent | rect. | 11 | 1 |
| 458 | 72.60 | temperature | 30 | 30 | > th | dose independent | sin | 7 | NA |
| 484 | 72.70 | humidity | 90 | 720 | < th | dose independent | rect. | 3 | 2 |
| 513 | 72.86 | wind | 1 | 270 | < th | dose independent | rect. | 3 | 1 |
| 524 | 72.92 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 4 | 10 |
| 692 | 73.46 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 4 | 10 |
| 695 | 73.47 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 1 | 12 |
| 703 | 73.49 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 22 | 9 |
| 709 | 73.51 | wind | 1 | 270 | < th | dose independent | rect. | 2 | 4 |
| 719 | 73.53 | humidity | 90 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 735 | 73.58 | atmosphere | 1000 | 270 | < th | dose independent | sin | 8 | NA |
| 764 | 73.65 | temperature | 30 | 30 | < th | dose independent | sin | 4 | NA |
| 778 | 73.67 | temperature | 30 | 30 | < th | dose independent | rect. | 21 | 23 |
| 815 | 73.77 | radiation | 1 | 10 | > th | dose dependent | rect. | 5 | 1 |
| 868 | 73.84 | radiation | 1 | 30 | > th | dose independent | sin | 10 | NA |
| 888 | 73.89 | atmosphere | 1000 | 270 | > th | dose independent | sin | 6 | NA |
| 932 | 73.94 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 21 | 11 |
| 946 | 73.97 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 20 | 15 |
| 949 | 73.98 | temperature | 30 | 30 | > th | dose independent | rect. | 11 | 7 |
| 989 | 74.02 | atmosphere | 1000 | 720 | > th | dose independent | rect. | 20 | 13 |
| 993 | 74.02 | temperature | 30 | 10 | > th | dose dependent | rect. | 11 | 7 |