Os05g0272300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0272300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116.92 | 0.508 | 11.6 | 1.06 | 0.855 | -1.71 | 0.769 | -0.823 | -0.126 | 8.07 | 21.7 | 1450 | -- | -- |
| 117.17 | 0.504 | 11.5 | 1.17 | 0.858 | -1.57 | 0.849 | -- | -0.0425 | 7.82 | 22.14 | 1383 | -- | -- |
| 118.24 | 0.506 | 11.6 | 1.03 | 0.858 | -1.58 | -- | -0.721 | -0.131 | 8.2 | 22 | 1447 | -- | -- |
| 118.92 | 0.508 | 11.6 | 1.16 | 0.823 | -1.52 | -- | -- | -0.0643 | 7.69 | 22.3 | 1256 | -- | -- |
| 150.21 | 0.571 | 11.6 | 1.14 | -- | -1.73 | -- | -0.735 | -0.0666 | -- | 22 | 2094 | -- | -- |
| 206.88 | 0.674 | 11.7 | 0.607 | 0.85 | -- | 0.714 | -- | -0.579 | 8.31 | -- | -- | -- | -- |
| 208.45 | 0.676 | 11.7 | 0.629 | 0.847 | -- | -- | -- | -0.579 | 8.38 | -- | -- | -- | -- |
| 142.04 | 0.555 | 11.6 | 1.14 | -- | -1.51 | -- | -- | -0.0603 | -- | 22.3 | 800 | -- | -- |
| 149.8 | 0.57 | 11.6 | -- | 0.734 | -1.23 | -- | -- | -0.279 | 7.42 | 22.3 | 1024 | -- | -- |
| 248.39 | 0.736 | 11.7 | 0.633 | -- | -- | -- | -- | -0.57 | -- | -- | -- | -- | -- |
| 218.87 | 0.692 | 11.7 | -- | 0.85 | -- | -- | -- | -0.649 | 8.32 | -- | -- | -- | -- |
| 173.1 | 0.613 | 11.6 | -- | -- | -1.29 | -- | -- | -0.243 | -- | 22.3 | 762 | -- | -- |
| 258.98 | 0.751 | 11.7 | -- | -- | -- | -- | -- | -0.64 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 121.04 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 14 |
| 25 | 121.87 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 28 | 121.97 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 31 | 122.04 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 40 | 122.19 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 56 | 122.44 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 180 | 123.99 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 228 | 124.60 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 237 | 124.76 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 3 |
| 250 | 124.91 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 323 | 125.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 351 | 126.02 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 364 | 126.16 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 368 | 126.17 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 369 | 126.17 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 432 | 126.77 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 702 | 129.31 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 777 | 130.12 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 808 | 130.37 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 864 | 131.04 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 887 | 131.21 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 990 | 131.94 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |