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Os05g0270800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phosphoribosylglycinamide formyltransferase, chloroplast precursor (EC 2.1.2.2) (GART) (GAR transformylase) (5'-phosphoribosylglycinamide transformylase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.81 | 0.384 | 8.81 | -0.363 | 0.954 | -1.78 | -0.483 | 0.146 | -0.167 | 17.5 | 0.5 | 275 | 2.95 | 2.88 |
| 66.45 | 0.38 | 8.81 | -0.358 | 0.939 | -1.76 | -0.581 | -- | -0.174 | 17.5 | 0.4997 | 280 | 2.9 | 2.82 |
| 66.62 | 0.38 | 8.81 | -0.33 | 0.924 | -1.78 | -- | 0.563 | -0.166 | 17.6 | 0.4992 | 279 | 2.92 | 2.77 |
| 67.13 | 0.382 | 8.81 | -0.362 | 0.923 | -1.74 | -- | -- | -0.174 | 17.7 | 0.3185 | 285 | 2.9 | 2.68 |
| 82.26 | 0.422 | 8.78 | -0.201 | -- | -2.34 | -- | 0.539 | -0.0487 | -- | 0.561 | 317 | 2.4 | 3.05 |
| 141.55 | 0.558 | 8.86 | -0.416 | 2.25 | -- | -0.517 | -- | -0.285 | 18 | -- | -- | -- | -- |
| 142.2 | 0.558 | 8.86 | -0.412 | 2.25 | -- | -- | -- | -0.287 | 18 | -- | -- | -- | -- |
| 81.78 | 0.421 | 8.78 | -0.356 | -- | -2.35 | -- | -- | -0.134 | -- | 0.2263 | 321 | 2.18 | 3.27 |
| 70.66 | 0.392 | 8.8 | -- | 0.906 | -1.76 | -- | -- | -0.133 | 17.7 | 0.4964 | 285 | 2.88 | 2.7 |
| 403.69 | 0.939 | 8.83 | -0.478 | -- | -- | -- | -- | -0.338 | -- | -- | -- | -- | -- |
| 146.67 | 0.567 | 8.85 | -- | 2.25 | -- | -- | -- | -0.241 | 18 | -- | -- | -- | -- |
| 83.46 | 0.425 | 8.78 | -- | -- | -2.26 | -- | -- | -0.082 | -- | 0.3447 | 346 | 1.75 | 3.83 |
| 409.72 | 0.945 | 8.81 | -- | -- | -- | -- | -- | -0.285 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.01 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 2 | 68.03 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 3 | 68.03 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 4 | 68.87 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 5 | 68.88 | wind | 7.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 6 | 68.90 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 8 | 69.12 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 10 | 69.12 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 11 | 69.12 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 14 | 69.12 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 16 | 69.12 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 19 | 69.12 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 20 | 69.59 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 26 | 70.81 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 27 | 70.81 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 33 | 71.40 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 84 | 72.45 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 19 |
| 87 | 72.59 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 88 | 72.59 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 115 | 72.91 | wind | 9.0 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 119 | 73.12 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 19 |
| 120 | 73.12 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 19 |
| 158 | 75.02 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 8 | 19 |
| 169 | 75.62 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 3 | 5 |
| 210 | 77.24 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 242 | 77.82 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 308 | 79.63 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 8 |
| 318 | 80.11 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 319 | 80.11 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 320 | 80.11 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 8 |
| 321 | 80.11 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 337 | 80.22 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 8 |
| 339 | 80.22 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 8 |
| 341 | 80.37 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 371 | 80.93 | wind | 9.0 | 90 | < th | dose dependent | rect. | 8 | 19 |
| 416 | 81.40 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 419 | 81.42 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 16 |
| 420 | 81.42 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 16 |
| 421 | 81.43 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 14 |
| 424 | 81.48 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 16 |
| 427 | 81.50 | temperature | 15.0 | 270 | > th | dose independent | rect. | 11 | 10 |
| 430 | 81.51 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 431 | 81.51 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 432 | 81.51 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 16 |
| 454 | 81.68 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 459 | 81.75 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 11 | 10 |
| 486 | 82.15 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 17 |
| 487 | 82.15 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 489 | 82.16 | wind | 7.0 | 270 | < th | dose independent | rect. | 19 | 7 |
| 502 | 82.39 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 7 |
| 503 | 82.39 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 7 |
| 504 | 82.39 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 7 |
| 505 | 82.39 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 7 |
| 506 | 82.39 | radiation | 1.0 | 270 | < th | dose independent | rect. | 19 | 7 |
| 511 | 82.39 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 17 |
| 512 | 82.39 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 17 |
| 513 | 82.39 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 19 | 7 |
| 518 | 82.41 | wind | 1.0 | 90 | > th | dose independent | rect. | 8 | 19 |
| 535 | 82.59 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 540 | 82.69 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 7 |
| 541 | 82.69 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 7 |
| 549 | 82.78 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 3 | 5 |
| 581 | 82.95 | wind | 1.0 | 270 | > th | dose independent | rect. | 11 | 10 |
| 610 | 83.10 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 7 |
| 611 | 83.10 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 7 |
| 618 | 83.17 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 619 | 83.17 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 630 | 83.28 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 653 | 83.42 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 8 | 19 |
| 672 | 83.56 | wind | 9.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 680 | 83.65 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 717 | 83.91 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 14 |
| 718 | 83.91 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 14 |
| 733 | 84.00 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 10 |
| 735 | 84.00 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 10 |
| 737 | 84.06 | radiation | 1.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 741 | 84.10 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 785 | 84.49 | wind | 9.0 | 270 | < th | dose independent | rect. | 2 | 17 |
| 787 | 84.52 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 813 | 84.82 | wind | 9.0 | 1440 | < th | dose independent | rect. | 4 | 5 |
| 814 | 84.82 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 5 |
| 817 | 84.82 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 4 | 5 |
| 819 | 84.82 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 4 | 5 |
| 820 | 84.82 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 4 | 5 |
| 822 | 84.82 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 19 |
| 875 | 85.19 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 880 | 85.23 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 958 | 85.55 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 979 | 85.71 | wind | 1.0 | 90 | > th | dose independent | rect. | 8 | 7 |
| 981 | 85.73 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 10 |
