Os05g0266900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0266900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.87 | 0.318 | 8.06 | -1.96 | 0.178 | 0.499 | 0.694 | 2.15 | 0.064 | 7.55 | 26.71 | 1246 | -- | -- |
| 47.04 | 0.319 | 8.11 | -2.43 | 0.193 | 0.751 | 0.767 | -- | 0.02 | 7.17 | 27.34 | 1244 | -- | -- |
| 46.67 | 0.318 | 8.06 | -1.91 | 0.189 | 0.459 | -- | 2.26 | 0.0709 | 5.72 | 26.91 | 1304 | -- | -- |
| 47.56 | 0.321 | 8.13 | -2.45 | 0.202 | 0.694 | -- | -- | -0.0302 | 5.69 | 27 | 1303 | -- | -- |
| 48.64 | 0.325 | 8.06 | -1.9 | -- | 0.47 | -- | 2.27 | 0.0751 | -- | 26.7 | 1314 | -- | -- |
| 68.2 | 0.387 | 8.12 | -2.23 | 0.268 | -- | 0.402 | -- | -0.0245 | 5.05 | -- | -- | -- | -- |
| 68.5 | 0.388 | 8.13 | -2.23 | 0.272 | -- | -- | -- | -0.0267 | 4.43 | -- | -- | -- | -- |
| 49.69 | 0.328 | 8.13 | -2.45 | -- | 0.713 | -- | -- | -0.0352 | -- | 26.72 | 1304 | -- | -- |
| 194.83 | 0.65 | 8.05 | -- | 0.203 | 0.318 | -- | -- | 0.29 | 5.57 | 31.3 | 1161 | -- | -- |
| 72.46 | 0.398 | 8.13 | -2.22 | -- | -- | -- | -- | -0.0195 | -- | -- | -- | -- | -- |
| 199.84 | 0.661 | 8.07 | -- | 0.23 | -- | -- | -- | 0.222 | 4.65 | -- | -- | -- | -- |
| 196.95 | 0.654 | 8.06 | -- | -- | 0.334 | -- | -- | 0.296 | -- | 31.25 | 1173 | -- | -- |
| 202.66 | 0.664 | 8.07 | -- | -- | -- | -- | -- | 0.227 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.44 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 5 | 45.43 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 14 | 45.90 | temperature | 25.0 | 720 | > th | dose dependent | sin | 12 | NA |
| 18 | 46.03 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 20 | 46.10 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 34 | 46.39 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 38 | 46.43 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 5 |
| 45 | 46.47 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 8 |
| 46 | 46.47 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 16 | 11 |
| 65 | 46.53 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 16 | 14 |
| 178 | 47.05 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 198 | 47.09 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 16 | 13 |
| 200 | 47.10 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 207 | 47.12 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 16 | 11 |
| 212 | 47.16 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 16 | 7 |
| 218 | 47.17 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 247 | 47.31 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 250 | 47.32 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 17 | 21 |
| 252 | 47.32 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 268 | 47.38 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 272 | 47.38 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 6 | 21 |
| 276 | 47.38 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 278 | 47.38 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 287 | 47.39 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 7 | 19 |
| 314 | 47.41 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 325 | 47.43 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 330 | 47.43 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 468 | 47.64 | temperature | 30.0 | 1440 | > th | dose independent | sin | 14 | NA |
| 488 | 47.67 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 550 | 47.72 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 557 | 47.73 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 558 | 47.73 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 559 | 47.73 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 573 | 47.75 | temperature | 30.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 580 | 47.76 | temperature | 30.0 | 1440 | < th | dose independent | sin | 13 | NA |
| 601 | 47.77 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 748 | 47.82 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 812 | 47.88 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 10 | 21 |
| 820 | 47.89 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 10 | 9 |
| 827 | 47.89 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 10 | 17 |