Os05g0264200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF639 family protein.
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Os05g0264200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF639 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.02 | 0.262 | 11.2 | 0.608 | 0.148 | 0.209 | -0.233 | -0.387 | 0.102 | 6.57 | 24.89 | 231 | -- | -- |
| 31.45 | 0.261 | 11.2 | 0.506 | 0.162 | 0.18 | -0.362 | -- | 0.0624 | 6.32 | 24.7 | 232 | -- | -- |
| 31.13 | 0.26 | 11.2 | 0.62 | 0.151 | 0.204 | -- | -0.45 | 0.106 | 6.18 | 24.87 | 236 | -- | -- |
| 31.78 | 0.263 | 11.2 | 0.486 | 0.169 | 0.173 | -- | -- | 0.0536 | 6.02 | 24.7 | 233 | -- | -- |
| 31.84 | 0.263 | 11.2 | 0.643 | -- | 0.27 | -- | -0.49 | 0.136 | -- | 25.1 | 253 | -- | -- |
| 33.2 | 0.27 | 11.2 | 0.431 | 0.274 | -- | -0.28 | -- | -0.0359 | 5.66 | -- | -- | -- | -- |
| 33.39 | 0.271 | 11.2 | 0.43 | 0.272 | -- | -- | -- | -0.0349 | 5.51 | -- | -- | -- | -- |
| 32.7 | 0.266 | 11.2 | 0.497 | -- | 0.249 | -- | -- | 0.0955 | -- | 24.9 | 243 | -- | -- |
| 37.65 | 0.286 | 11.2 | -- | 0.209 | 0.107 | -- | -- | -0.0326 | 5.72 | 24.9 | 230 | -- | -- |
| 37.23 | 0.285 | 11.2 | 0.439 | -- | -- | -- | -- | -0.0283 | -- | -- | -- | -- | -- |
| 38.26 | 0.289 | 11.2 | -- | 0.279 | -- | -- | -- | -0.0828 | 5.45 | -- | -- | -- | -- |
| 39.23 | 0.292 | 11.2 | -- | -- | 0.2 | -- | -- | 0.0099 | -- | 25.04 | 251 | -- | -- |
| 42.31 | 0.304 | 11.2 | -- | -- | -- | -- | -- | -0.0769 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.64 | temperature | 25 | 30 | > th | dose dependent | rect. | 22 | 18 |
| 2 | 28.68 | temperature | 25 | 30 | > th | dose dependent | rect. | 6 | 10 |
| 3 | 28.68 | temperature | 25 | 30 | > th | dose dependent | rect. | 4 | 12 |
| 19 | 29.03 | temperature | 30 | 90 | > th | dose independent | rect. | 8 | 8 |
| 40 | 29.20 | temperature | 25 | 30 | > th | dose dependent | rect. | 9 | 7 |
| 80 | 29.57 | temperature | 30 | 90 | > th | dose independent | sin | 5 | NA |
| 98 | 29.61 | temperature | 30 | 90 | < th | dose independent | sin | 5 | NA |
| 146 | 29.88 | temperature | 30 | 270 | > th | dose dependent | rect. | 8 | 2 |
| 199 | 29.93 | temperature | 25 | 30 | > th | dose dependent | sin | 3 | NA |
| 251 | 30.06 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 2 |
| 283 | 30.07 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 315 | 30.16 | temperature | 10 | 270 | > th | dose dependent | sin | 5 | NA |
| 320 | 30.17 | temperature | 25 | 270 | > th | dose dependent | rect. | 22 | 15 |
| 450 | 30.33 | temperature | 30 | 270 | < th | dose dependent | sin | 4 | NA |
| 480 | 30.35 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 14 |
| 701 | 30.52 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 15 |
| 707 | 30.52 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 24 | 21 |
| 708 | 30.53 | temperature | 30 | 30 | > th | dose independent | rect. | 12 | 4 |
| 726 | 30.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 815 | 30.63 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 17 |
| 861 | 30.64 | temperature | 10 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 883 | 30.66 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 22 |
| 947 | 30.69 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 7 |
| 994 | 30.71 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 14 |