Os05g0263500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os05g0263500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 106 | 0.484 | 8.01 | -0.988 | 1.39 | -1.98 | -0.509 | 0.15 | -0.296 | 18.4 | 29.88 | 114 | -- | -- |
| 106.02 | 0.48 | 8 | -0.963 | 1.39 | -1.97 | -0.567 | -- | -0.286 | 18.4 | 29.87 | 122 | -- | -- |
| 106.59 | 0.481 | 8.01 | -1 | 1.39 | -1.96 | -- | 0.305 | -0.302 | 18.4 | 29.8 | 125 | -- | -- |
| 106.69 | 0.481 | 8 | -0.957 | 1.37 | -1.97 | -- | -- | -0.294 | 18.4 | 29.74 | 130 | -- | -- |
| 179.4 | 0.624 | 8.01 | -1.34 | -- | -3.3 | -- | 0.932 | -0.432 | -- | 59.16 | 266 | -- | -- |
| 157.76 | 0.589 | 7.92 | -0.47 | 1.87 | -- | -0.35 | -- | 0.0954 | 17.4 | -- | -- | -- | -- |
| 158.06 | 0.589 | 7.92 | -0.469 | 1.87 | -- | -- | -- | 0.0938 | 17.4 | -- | -- | -- | -- |
| 180.02 | 0.625 | 7.99 | -1.2 | -- | -3.27 | -- | -- | -0.393 | -- | 67.06 | 265 | -- | -- |
| 128.2 | 0.527 | 7.96 | -- | 1.48 | -1.56 | -- | -- | -0.106 | 18.1 | 29.92 | 125 | -- | -- |
| 339.95 | 0.862 | 7.89 | -0.532 | -- | -- | -- | -- | 0.0478 | -- | -- | -- | -- | -- |
| 163.86 | 0.599 | 7.91 | -- | 1.88 | -- | -- | -- | 0.146 | 17.4 | -- | -- | -- | -- |
| 215.3 | 0.683 | 7.95 | -- | -- | -2.87 | -- | -- | -0.215 | -- | 74.65 | 264 | -- | -- |
| 347.41 | 0.87 | 7.88 | -- | -- | -- | -- | -- | 0.107 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 103.35 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 2 | 103.74 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 6 | 105.19 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 10 | 105.36 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 14 | 105.79 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 20 | 106.32 | temperature | 30.0 | 90 | < th | dose dependent | no | NA | NA |
| 22 | 106.58 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 26 | 106.90 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 30 | 107.14 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 31 | 107.33 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 49 | 108.03 | temperature | 10.0 | 90 | > th | dose dependent | sin | 6 | NA |
| 50 | 108.05 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 68 | 108.58 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 79 | 108.98 | temperature | 15.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 89 | 109.24 | temperature | 30.0 | 90 | < th | dose dependent | sin | 5 | NA |
| 95 | 109.39 | temperature | 15.0 | 90 | > th | dose dependent | no | NA | NA |
| 106 | 109.81 | temperature | 15.0 | 10 | > th | dose dependent | no | NA | NA |
| 120 | 110.20 | temperature | 30.0 | 270 | < th | dose dependent | sin | 8 | NA |
| 146 | 110.86 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 7 | 4 |
| 147 | 110.88 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 148 | 110.93 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 151 | 110.96 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 167 | 111.12 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 168 | 111.12 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 181 | 111.43 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 7 | 3 |
| 184 | 111.44 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 218 | 111.82 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 22 | 13 |
| 226 | 111.87 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 338 | 113.43 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 359 | 113.61 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 364 | 113.65 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 375 | 113.72 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 538 | 115.11 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 22 | 22 |
| 543 | 115.15 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 3 |
| 603 | 115.46 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 614 | 115.50 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 739 | 116.01 | wind | 1.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 767 | 116.09 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 6 | 17 |
| 809 | 116.21 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 815 | 116.24 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 1000 | 116.65 | temperature | 15.0 | 1440 | > th | dose dependent | sin | 4 | NA |