Os05g0263300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os05g0263300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 129.55 | 0.535 | 3.03 | 0.0729 | 0.14 | 2.53 | -0.0831 | 6.36 | 0.0686 | 7.79 | 9.3 | 259 | -- | -- |
| 133.76 | 0.539 | 3 | 0.0712 | 0.274 | 2.05 | -0.00638 | -- | 0.0978 | 7.43 | 10.49 | 271 | -- | -- |
| 129.57 | 0.53 | 3.03 | 0.07 | 0.14 | 2.53 | -- | 6.36 | 0.0684 | 7.82 | 9.301 | 259 | -- | -- |
| 132.05 | 0.535 | 3 | 0.082 | 0.175 | 2.1 | -- | -- | 0.0964 | 7.24 | 11.5 | 238 | -- | -- |
| 130.62 | 0.532 | 3.03 | 0.0683 | -- | 2.47 | -- | 6.35 | 0.0691 | -- | 9.313 | 259 | -- | -- |
| 134.63 | 0.544 | 3.01 | -0.0435 | 0.119 | -- | 0.0724 | -- | 0.0489 | 8.79 | -- | -- | -- | -- |
| 134.64 | 0.543 | 3.01 | -0.0411 | 0.118 | -- | -- | -- | 0.0489 | 8.81 | -- | -- | -- | -- |
| 131.59 | 0.534 | 3.01 | -0.0154 | -- | 1.39 | -- | -- | 0.0604 | -- | 11.09 | 226 | -- | -- |
| 130.75 | 0.533 | 3.01 | -- | 0.128 | 1.45 | -- | -- | 0.0675 | 7.68 | 11.45 | 345 | -- | -- |
| 135.44 | 0.544 | 3.01 | -0.0409 | -- | -- | -- | -- | 0.0498 | -- | -- | -- | -- | -- |
| 134.69 | 0.543 | 3.01 | -- | 0.118 | -- | -- | -- | 0.0535 | 8.83 | -- | -- | -- | -- |
| 131.6 | 0.534 | 3.01 | -- | -- | 1.4 | -- | -- | 0.0621 | -- | 11.12 | 271 | -- | -- |
| 135.48 | 0.543 | 3.01 | -- | -- | -- | -- | -- | 0.0544 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 120.86 | temperature | 25.0 | 90 | > th | dose independent | rect. | 2 | 1 |
| 2 | 122.43 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
| 4 | 124.75 | wind | 7.0 | 720 | > th | dose independent | rect. | 15 | 1 |
| 5 | 125.33 | temperature | 25.0 | 90 | > th | dose independent | rect. | 1 | 3 |
| 7 | 125.66 | wind | 9.0 | 10 | > th | dose independent | rect. | 15 | 1 |
| 17 | 125.66 | wind | 9.0 | 10 | > th | dose dependent | rect. | 15 | 1 |
| 27 | 125.77 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 28 | 126.00 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 29 | 126.02 | wind | 7.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 33 | 126.40 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 38 | 127.10 | wind | 9.0 | 90 | > th | dose dependent | rect. | 10 | 6 |
| 40 | 127.16 | wind | 9.0 | 90 | > th | dose dependent | rect. | 19 | 21 |
| 42 | 127.17 | wind | 9.0 | 90 | > th | dose dependent | rect. | 21 | 19 |
| 62 | 127.75 | wind | 9.0 | 90 | > th | dose independent | rect. | 19 | 21 |
| 65 | 127.78 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 3 | 1 |
| 73 | 127.78 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 88 | 127.83 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 89 | 127.84 | wind | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 91 | 127.84 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 93 | 127.85 | wind | 9.0 | 90 | > th | dose independent | rect. | 10 | 6 |
| 94 | 127.85 | wind | 9.0 | 90 | > th | dose independent | rect. | 21 | 19 |
| 100 | 127.88 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 114 | 127.90 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 119 | 127.91 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 123 | 127.91 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 126 | 127.92 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 131 | 127.93 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 134 | 127.93 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 137 | 127.93 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 138 | 127.93 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 140 | 127.93 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 145 | 127.93 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 147 | 127.93 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 148 | 127.93 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 153 | 127.93 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 161 | 128.04 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 162 | 128.05 | humidity | 90.0 | 90 | < th | dose independent | rect. | 2 | 1 |
| 163 | 128.05 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 165 | 128.08 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 4 | 5 |
| 170 | 128.12 | humidity | 70.0 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 172 | 128.15 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 1 | 8 |
| 173 | 128.15 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 181 | 128.18 | wind | 5.0 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 192 | 128.27 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 281 | 128.51 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 15 | 11 |
| 335 | 128.78 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 21 | 12 |
| 354 | 128.96 | wind | 9.0 | 90 | > th | dose dependent | rect. | 14 | 21 |
| 356 | 129.00 | wind | 9.0 | 270 | > th | dose independent | sin | 3 | NA |
| 364 | 129.04 | wind | 9.0 | 90 | > th | dose independent | rect. | 14 | 21 |
| 389 | 129.13 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 390 | 129.14 | wind | 1.0 | 1440 | < th | dose independent | rect. | 24 | 1 |
| 408 | 129.19 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 19 | 6 |
| 419 | 129.22 | wind | 9.0 | 720 | > th | dose independent | rect. | 10 | 1 |
| 428 | 129.23 | wind | 9.0 | 720 | > th | dose dependent | rect. | 10 | 1 |
| 444 | 129.28 | wind | 1.0 | 10 | < th | dose dependent | rect. | 7 | 6 |
| 446 | 129.30 | humidity | 60.0 | 270 | < th | dose independent | rect. | 8 | 1 |
| 472 | 129.30 | humidity | 60.0 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 503 | 129.32 | humidity | 60.0 | 90 | < th | dose dependent | rect. | 17 | 17 |
| 504 | 129.34 | wind | 1.0 | 10 | < th | dose dependent | rect. | 7 | 3 |
| 508 | 129.35 | wind | 9.0 | 270 | < th | dose independent | sin | 3 | NA |
| 526 | 129.36 | humidity | 60.0 | 30 | < th | dose independent | rect. | 17 | 17 |
| 533 | 129.37 | humidity | 60.0 | 90 | < th | dose independent | rect. | 18 | 15 |
| 552 | 129.37 | humidity | 60.0 | 90 | < th | dose dependent | rect. | 18 | 15 |
| 555 | 129.38 | wind | 1.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 580 | 129.43 | wind | 9.0 | 270 | > th | dose dependent | sin | 3 | NA |
| 584 | 129.44 | wind | 9.0 | 720 | > th | dose independent | rect. | 1 | 10 |
| 595 | 129.45 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
| 596 | 129.45 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 597 | 129.46 | humidity | 60.0 | 30 | < th | dose independent | rect. | 9 | 1 |
| 630 | 129.46 | wind | 1.0 | 10 | < th | dose independent | rect. | 9 | 18 |
| 633 | 129.46 | humidity | 60.0 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 731 | 129.48 | wind | 1.0 | 10 | < th | dose independent | rect. | 7 | 3 |
| 791 | 129.52 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 20 | 2 |
| 850 | 129.58 | wind | 9.0 | 90 | > th | dose dependent | sin | 0 | NA |
| 871 | 129.62 | wind | 1.0 | 10 | < th | dose independent | rect. | 6 | 21 |
| 898 | 129.64 | radiation | 40.0 | 30 | > th | dose dependent | rect. | 9 | 1 |
| 964 | 129.67 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 970 | 129.67 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 10 | 4 |
| 974 | 129.68 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 997 | 129.70 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 10 |