Os05g0262000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os05g0262000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.55 | 0.255 | 9.85 | 0.218 | 1.59 | -0.787 | -0.163 | 2.6 | 0.0764 | 15.1 | 25.87 | 1341 | -- | -- |
| 31.36 | 0.261 | 9.9 | -0.365 | 1.6 | -0.57 | -0.236 | -- | 0.0646 | 15 | 22.22 | 7116 | -- | -- |
| 29.62 | 0.253 | 9.85 | 0.191 | 1.59 | -0.781 | -- | 2.59 | 0.0637 | 15.1 | 26.07 | 1339 | -- | -- |
| 31.46 | 0.261 | 9.9 | -0.379 | 1.61 | -0.555 | -- | -- | 0.06 | 15.1 | 22.12 | 7122 | -- | -- |
| 158.91 | 0.59 | 9.99 | -0.985 | -- | 1.3 | -- | -0.552 | -0.335 | -- | 23.8 | 2627 | -- | -- |
| 43.13 | 0.308 | 9.94 | -0.643 | 1.65 | -- | -0.128 | -- | -0.12 | 15.1 | -- | -- | -- | -- |
| 43.19 | 0.308 | 9.94 | -0.646 | 1.65 | -- | -- | -- | -0.121 | 15.1 | -- | -- | -- | -- |
| 158.09 | 0.588 | 9.98 | -0.906 | -- | 1.27 | -- | -- | -0.306 | -- | 24.01 | 8369 | -- | -- |
| 34.12 | 0.272 | 9.87 | -- | 1.6 | -0.725 | -- | -- | 0.235 | 15.1 | 20.86 | 8597 | -- | -- |
| 199.08 | 0.659 | 9.95 | -0.717 | -- | -- | -- | -- | -0.164 | -- | -- | -- | -- | -- |
| 54.19 | 0.344 | 9.93 | -- | 1.66 | -- | -- | -- | -0.0486 | 15.1 | -- | -- | -- | -- |
| 179.24 | 0.626 | 9.95 | -- | -- | 1.14 | -- | -- | -0.192 | -- | 24.01 | 8369 | -- | -- |
| 212.62 | 0.681 | 9.93 | -- | -- | -- | -- | -- | -0.0841 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.29 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 1 | 7 |
| 3 | 27.91 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 3 | 18 |
| 7 | 28.08 | wind | 3.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 8 | 28.09 | wind | 3.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 15 | 28.39 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 26 | 28.54 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 34 | 28.65 | wind | 3.0 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 38 | 28.82 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 20 |
| 39 | 28.83 | wind | 3.0 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 46 | 28.95 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 48 | 29.00 | temperature | 20.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 56 | 29.09 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 60 | 29.13 | wind | 3.0 | 90 | < th | dose dependent | rect. | 3 | 15 |
| 70 | 29.22 | temperature | 20.0 | 270 | > th | dose independent | rect. | 2 | 17 |
| 83 | 29.34 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 18 | 12 |
| 84 | 29.34 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 20 | 13 |
| 97 | 29.42 | wind | 3.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 112 | 29.57 | wind | 3.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 118 | 29.63 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 18 | 14 |
| 124 | 29.68 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 18 | 17 |
| 156 | 29.88 | wind | 9.0 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 159 | 29.89 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 16 | 22 |
| 164 | 29.92 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 174 | 29.96 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 6 | 16 |
| 187 | 29.98 | wind | 3.0 | 90 | < th | dose independent | rect. | 3 | 4 |
| 210 | 30.01 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 16 | 5 |
| 213 | 30.01 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 16 | 18 |
| 233 | 30.04 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 3 |
| 235 | 30.04 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 3 |
| 252 | 30.04 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 255 | 30.05 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 284 | 30.08 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 2 | 3 |
| 317 | 30.12 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 20 | NA |
| 349 | 30.15 | temperature | 30.0 | 720 | < th | dose dependent | sin | 10 | NA |
| 350 | 30.15 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 403 | 30.21 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 6 | 5 |
| 406 | 30.21 | wind | 9.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 409 | 30.23 | temperature | 20.0 | 720 | > th | dose dependent | sin | 10 | NA |
| 410 | 30.23 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 3 | 6 |
| 422 | 30.25 | wind | 1.0 | 270 | > th | dose independent | rect. | 5 | 10 |
| 448 | 30.28 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 453 | 30.29 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 464 | 30.31 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 6 | 5 |
| 474 | 30.32 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 19 | 12 |
| 478 | 30.33 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 9 | 7 |
| 484 | 30.34 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 507 | 30.37 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 520 | 30.38 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 18 | 17 |
| 526 | 30.39 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 536 | 30.41 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 19 | 1 |
| 578 | 30.45 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 5 | 11 |
| 584 | 30.46 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 5 |
| 587 | 30.46 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 597 | 30.47 | wind | 5.0 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 598 | 30.47 | wind | 5.0 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 607 | 30.48 | wind | 7.0 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 614 | 30.49 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 650 | 30.52 | wind | 7.0 | 43200 | < th | dose independent | rect. | 2 | 14 |
| 652 | 30.52 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 659 | 30.53 | wind | 7.0 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 666 | 30.54 | wind | 7.0 | 43200 | > th | dose independent | rect. | 2 | 14 |
| 667 | 30.54 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 14 |
| 668 | 30.54 | wind | 7.0 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 669 | 30.54 | wind | 7.0 | 43200 | < th | dose independent | rect. | 24 | 16 |
| 673 | 30.54 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 14 |
| 737 | 30.61 | wind | 5.0 | 43200 | > th | dose independent | rect. | 8 | 8 |
| 749 | 30.62 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 756 | 30.63 | wind | 3.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 776 | 30.65 | wind | 7.0 | 43200 | < th | dose independent | sin | 2 | NA |
| 812 | 30.68 | wind | 7.0 | 43200 | > th | dose independent | sin | 2 | NA |
| 844 | 30.70 | radiation | 1.0 | 270 | < th | dose independent | rect. | 2 | 3 |
| 850 | 30.70 | wind | 5.0 | 43200 | > th | dose dependent | sin | 1 | NA |
| 860 | 30.71 | radiation | 10.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 864 | 30.71 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 2 | 3 |
| 870 | 30.72 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 3 |
| 872 | 30.72 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 3 |
| 873 | 30.72 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 3 |
| 877 | 30.72 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 3 |
| 878 | 30.72 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 2 | 3 |
| 885 | 30.72 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 19 | 12 |
| 889 | 30.72 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 21 |
| 898 | 30.73 | wind | 3.0 | 90 | < th | dose independent | rect. | 3 | 8 |
| 904 | 30.73 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 910 | 30.74 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 934 | 30.76 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 18 |
| 941 | 30.76 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 964 | 30.78 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 5 |
| 971 | 30.79 | wind | 7.0 | 90 | < th | dose independent | rect. | 21 | 6 |